Nonlocality of Reaction-Diffusion Equations Induced by Delay: Biological Modeling and Nonlinear Dynamics

We present a short survey on the biological modeling, dynamics analysis, and numerical simulation of nonlocal spatial effects, induced by time delays, in diffusion models for a single species confined to either a finite or an infinite domain. The nonlocality, a weighted average in space, arises when account is taken of the fact that individuals have been at different points in space at previous times. We discuss and compare two existing approaches to correctly derive the spatial averaging kernels, and we summarize some of the recent developments in both qualitative and numerical analysis of the nonlinear dynamics, including the existence, uniqueness (up to a translation), and stability of traveling wave fronts and periodic spatio-temporal patterns of the model equations in unbounded domains and the linear stability, boundedness, global convergence of solutions and bifurcations of the model equations in finite domains.     

Computation of the Morse Spectrum

The Morse spectrum is a limit set of Lyapunov exponents of periodic pseudo-trajectories. This notion is especially important in the case where a dynamical system has infinitely many periodic trajectories of large period. A method for estimating the Morse spectrum was suggested by the first author in J. Math. Anal. Appl., 252 (2000). This method is based on ideas of symbolic dynamics which reduces the study of a dynamical system to the study of a certain graph, called a symbolic image. Within the framework of this method, the computation of the Morse spectrum is connected with searching simple closed paths and extracting contours with suitable characteristics. However, under iterations of the symbolic image, the number of such paths sharply increases, which leads to huge expenses of memory and time. We suggest an algorithm for constructing contours with the maximal and minimal mean values. This algorithm is based on a special version of the simplex method. Numerical tests are also described. Bibliography: 13 titles. Illustrations: 3 figures.     

Allocating energy in a first-to-n match

This paper models a decision where a player must allocate limitedenergy over a contest of uncertain length. The motivating exampleis a squash match where one of the players is not as fit asthe other. Should a player's energy be concentrated in the earlygames of the match? Should it be spread evenly over all possiblegames? Or should it be conserved for the end of the match? Wemodel this as a decision problem where, in each game, the decision-makermust determine how much energy to expend. We assume that thereare only a small number of discrete energy choices for eachgame and that the more energy the decision-maker expends, themore likely he is to win that game. We solve for the optimaldecision with dynamic programming. With only two possible energychoices for each game, we show that it does not matter how energyis expended. In the case where there are three or more energychoices, we show how to take advantage of the structure of theproblem to determine the optimal sequence of decisions. As forpractical advice, the model suggests that when the decision-makerfalls behind in a match, he ought to switch to a more conservativeapproach by dividing his remaining energy evenly among all thepossible remaining games. Received 14 May 2003. Revised 5 January 2004.     

Numerical Modeling of Solitons in a Low Birefringent Optical Fiber

A numerical investigation, based on the split-step Fourier transform algorithm of all optical switching of solitons in a low birefringent optical fiber is presented. The numerical algorithm is described in detail. This revised version was published online in August 2006 with corrections to the Cover Date.     

Parametric multiple sequence alignment and phylogeny construction

Bounds are given on the size of the parameter-space decomposition induced by multiple sequence alignment problems where phylogenetic information may be given or inferred. It is shown that many of the usual formulations of these problems fall within the same integer parametric framework, implying that the number of distinct optima obtained as the parameters are varied across their ranges is polynomially bounded in the length and number of sequences.     

Stark's conjecture over complex cubic number fields

Systematic computation of Stark units over nontotally real base fields is carried out for the first time. Since the information provided by Stark's conjecture is significantly less in this situation than the information provided over totally real base fields, new techniques are required. Precomputing Stark units in relative quadratic extensions (where the conjecture is already known to hold) and coupling this information with the Fincke-Pohst algorithm applied to certain quadratic forms leads to a significant reduction in search time for finding Stark units in larger extensions (where the conjecture is still unproven). Stark's conjecture is verified in each case for these Stark units in larger extensions and explicit generating polynomials for abelian extensions over complex cubic base fields, including Hilbert class fields, are obtained from the minimal polynomials of these new Stark units.

     

Dynamics and crystal chemistry of tellurites. II. Composition- and temperature-dependence of the Raman spectra of x(Tl2O)+(1−x) Te2O glasses: evidence for a phase separation?

Immiscibility effects are suggested to be inherent in tellurite glasses with weak (low valence) cations. This hypothesis is used to explain the structural evolution of the x(Tl₂O)+(1−x)Te₂O glass system as a function of the x value and during temperature-induced crystallisation processes. The results of Raman measurements support the hypothesis.     

An optical fibre pH sensor based on dye doped mesostructured silica

This paper describes the synthesis and optical pH sensing properties of a pH indicator dye activated mesostructured silica coated optical fibre. The pH-sensitive dye bromothymol blue was incorporated into the mesostructure sol precursor and thin films/coatings were used for pH-sensing applications without prior removal of the surfactant. The pH sensitivity range and operating wavelength were analysed by absorption measurements on layer dip-coated on glass slides. The pH sensing properties of coated optical fibre were tested by evanescent wave method. Experiments were carried out by using a series of solutions of known pH. No leaching was observed (except at very high pH) and an excellent reversibility was obtained between pH=2 and 5.     

Intercomparison of retrieval codes used for the analysis of high-resolution, ground-based FTIR measurements

A rigorous and systematic intercomparison of codes used for the retrieval of trace gas profiles from high-resolution ground-based solar absorption FTIR measurements is presented for the first time. Spectra were analyzed with the two widely used independent, retrieval codes: SFIT2 and PROFFIT9. Vertical profiles of O₃, HNO₃, HDO, and N₂O were derived from the same set of typical observed spectra. Analysis of O₃ was improved by using updated line parameters. It is shown that profiles and total column amounts are in excellent agreement, when similar constraints are applied, and that the resolution kernel matrices are also consistent. Owing to the limited altitude resolution of ground-based observations, the impact of the constraints on the solution is not negligible. It is shown that the results are also compatible for independently chosen constraints. Perspectives for refined constraints are discussed. It can be concluded that the error budget introduced by the radiative transfer code and the retrieval algorithm on total columns deduced from high-resolution ground-based solar FTIR spectra is below 1%.