Unprecedented hour-long residence time of a cation in a left-handed G-quadruplex

Cations are critical for the folding and assembly of nucleic acids. In G-quadruplex structures, cations can bind between stacked G-tetrads and coordinate with negatively charged guanine carbonyl oxygens. They usually exchange between binding sites and with the bulk in solution with time constants ranging from sub-millisecond to seconds. Here we report the first observation of extremely long-lived K⁺ and NH₄⁺ ions, with an exchange time constant on the order of an hour, when coordinated at the center of a left-handed G-quadruplex DNA. A single-base mutation, that switched one half of the structure from left- to right-handed conformation resulting in a right–left hybrid G-quadruplex, was shown to remove this long-lived behaviour of the central cation.

An extremely long-lived cation has been detected in left-handed G-quadruplexes.     

Surfactant tail length-dependent lipase activity profile in cationic water-in-oil microemulsions

The catalytic activity of Chromobacterium viscosum lipase (CV-lipase) was estimated across varying surfactant tail lengths (C-10-C-18) in water-in-oil (w/o) microemulsions of cationic surfactants containing four different hydroxyethyl-substituted head groups. An attempt to find a correlation, if any, between the activity of interfacially solubilized lipase and the varying surfactant tails was made for the first time in micellar enzymology. The second-order rate constant, k2, in lipase-catalyzed hydrolysis of p-nitrophenyl-n-hexanoate at pH 6.0 and 25 degrees C shows an improvement in enzyme activity (approximately 30-140%) across different head groups of amphiphiles with increasing tail lengths in varying solution compositions. Improvement of enzyme activity is prominent in ascending from C-10 to C-14/C-16, depending on the nature of polar head group. The hydrolytic activity of lipase in different surfactant (50 mM)/water/isooctane/n-hexanol with varying z= [alcohol]/[surfactant] (6.4 or 4.8) was amplified by 25-250% with increment in surfactant tail length in comparison with widely used cationic w/o microemulsions having solution compositions (z=16). As a notable outcome of this research, we found w/o microemulsions of 25 mM tetradecyltrimethylammonium bromide/water/isooctane/n-hexanol (z=8) producing the highest ever activity of lipase in any w/o microemulsions.     

Isolement de l'acide 3-amino 12-methyl tetradecanoique et de l'acide 3-amino 12-methyl tridecanoique a partir de l'iturine,antibiotique de Bacillus subtilis

lturin, a peptide antibiotic from Bacillus subtilis, was separated into three iturins: A, B, C by thin-layer chromatography. Iturin A, which has an antifungal activity, contains Asp, Glu, Tyr, Ser, Pro in a molar ratio 3:1:1:1:1 and a lipid moiety AL. The latter was shown to be a mixture of C₁₄ (40%) and C₁₅, (60%) amino-acids. The structure of these was determined by combined gas chromatography-mass spectrometry of the N-acetylmethyl esters. Strong peaks at m/e = 144 and m/e = 102 indicate a β-amino group. Identification of acetone and methylethylketone after chromic acid oxidation indicates an iso and anteiso structure. After comparison of the natural amino-acids with synthetic 3-amino pentadecanoic acid it is concluded that the lipid AL is a mixture of 3-amino 12- methyltetradecanoic acid and 3-amino 12-methyltridecanoic acid.     

Ternary copper complexes for photocleavage of DNA by red light: direct evidence for sulfur-to-copper charge transfer and d-d band involvement

A new class of ternary copper(II) complexes of formulation [Cu(L(n)B](ClO(4)) (1-4), where HL(n) is a NSO-donor Schiff base (HL(1), HL(2)) and B is a NN-donor heterocyclic base viz. 1,10-phenanthroline (phen) and 2,9-dimethyl-1,10-phenanthroline (dmp), are prepared, structurally characterized, and their DNA binding and photocleavage activities studied in the presence of red light. Ternary complex [Cu(L(3))(phen)](ClO(4)) (5) containing an ONO-donor Schiff base and a binary complex [Cu(L(2))(2)] (6) are also prepared and structurally characterized for mechanistic investigations of the DNA cleavage reactions. While 1-4 have a square pyramidal (4 + 1) CuN(3)OS coordination geometry with the Schiff base bonded at the equatorial sites, 5 has a square pyramidal (4 + 1) geometry with CuN(3)O(2) coordination with the alcoholic oxygen at the axial site, and 6 has a square planar trans-CuN(2)O(2) geometry. Binding of the complexes 1-4 to calf thymus DNA shows the relative order: phen > dmp. Mechanistic investigations using distamycin reveal minor groove binding for the complexes. The phen complexes containing the Schiff base with a thiomethyl or thiophenyl moiety show red light induced photocleavage. The dmp complexes are essentially photonuclease inactive. Complexes 5 and 6 are cleavage inactive under similar photolytic conditions. A 10 microM solution of 1 displays a 72% cleavage of SC DNA (0.5 microg) on an exposure of 30 min using a 603 nm Nd:YAG pulsed laser (60 mJ/P) in Tris-HCl buffer (pH 7.2). Significant cleavage of 1 is also observed at 694 nm using a Ruby laser. Complex 1 is cleavage inactive under argon or nitrogen atmosphere. It shows a more enhanced cleavage in pure oxygen than in air. Enhancement of cleavage in D(2)O and inhibition with sodium azide addition indicate the possibility of the formation of singlet oxygen as a reactive intermediate leading to DNA cleavage. The d-d band excitation with red light shows significant enhancement of cleavage yield. The results indicate that the phen ligand is necessary for DNA binding of the complex. Both the sulfur-to-copper charge transfer band and copper d-d band excitations helped the DNA cleavage. While the absorption of a red photon induces a metal d-d transition, excitation at shorter visible wavelengths leads to the sulfur-to-copper charge transfer band excitation at the initial step of photocleavage. The excitation energy is subsequently transferred to ground state oxygen molecules to produce singlet oxygen that cleaves the DNA.     

A new cytokinin from the fruits of zantedeschiaaethiopica

A new purine derivative with cytokinin activity was isolated from the cuckoo-pint fruits ($\text{Zantedeschia}$$\text{aethiopica}$) and identified as 6-(o-hydroxybenzylamino)-2-methylthio-9-β-D-glucofuranosylpurine $\text{1}$.     

Radiochemical separation of bismuth activities using Dalzin,and its application to geological problems

A radiochemical method has been devised for the separation of bismuth activities of the natural series,viz.²¹⁴Bi,²¹⁰Bi and²¹²Bi, and applied to the indirect estimation of their corresponding precursors,²²²Rn,²¹⁰Pb and²¹²Pb, in a wide variety of geological materials. The method consists of the solvent extraction of bismuth in radiochemically pure form from the sample solution atpH 2 with diallyldithiocarbamido-hydrazine (Dalzin) in chloroform, and back extraction with 2M acid. The advantages of this method over the dithizone extraction system are discussed.     

Precipitation from homogeneous solution by photochemical action: determination of thorium

Thorium was precipitated from homogeneous solution by photochemical reduction of periodate to iodate in a solution containing thorium and perchloric acid, by means of a 2537 A low-pressure mercury vapour lamp. For weighing, the precipitate was redissolved, precipitated once as thorium hydroxide, and finally as thorium oxalate, which was ignited to thorium dioxide. Quantitative results were obtained in the range 35-180 mg of thorium.     

Interaction of acridine orange monohydrochloride dye with sodiumdodecylsulfate, (SDS) cetyltrimethylammoniumbromide (CTAB) and p-tert-octylphenoxypolyoxy ethanol (Triton X 100) surfactants

Summary Results of spectrophotometric, conductometric and dialysis studies on the interaction of acridine orange monohydrochloride dye with sodiumdodecylsulfate (anionic), cetyltrimethylammoniumbromide (cationic) and Triton X 100 (nonionic) surfactants have been reported. The anionic surfactant, SDS has been observed to undergo both electrostatic and hydrophobic interactions with the dye cation. Aggregation of the dye molecules can be destroyed when the surfactant is in large excess, whereas, excess dye can check micellization of SD S. At a ratio of AO:SDS=1:7 and above, dye embedded mixed micelles are formed. These remain in a separate phase, probably as coacervates. At lower ratios than 1:7, aggregation of dye molecules is induced, which being complexed with SDS become stabilized as colloids. The colloid and the coacervate have been observed to be thermally stable, negatively charged materials that can be broken by salts, and cations of higher valency are more effective in this regard. An 1:3 = AO:SDS colloid has beeen found to be sufficiently large like the coacervates to pass through a membrane having cut off permeability for molecular weights 12,000 and above. All the above features of AO-SDS interaction have been observed to be absent for AO-CTAB and AO-TX 100 systems, Even hydrophobic interaction has played an insignificant role in these cases. Thus, the dye cation, the cationic and the nonionic surfactants have almost retained their self physicochemical identities in solution in the presence of each other. Electrostatic interaction is thus the primary requirement for acridine orange-surfactant (anionic) system; the hydrophobic effect is secondary and may become co-operative.With 9 figures and 2 tables     

Studies on ion association. Calorimetric study of the formation of monoazido complexes of Ni(II), Zn(II) and Cd(II)

From rehydration experiments the hydrates Ba(OH)₂ · 8 H₂O, Ba(OH)₂ · 3 H₂O β-Ba(OH)₂, · 1 H₂O, and γ-Ba(OH)₂ · 1 H₂O have been found in the system Ba(OH)₂-H₂O. Thermoanalytical measurements (DTA, TG, DTG, high temperature X-ray diffraction, high temperature Raman scattering) on these hydrates are reported. Thermal decomposition of Ba(OH)₂ · 8 H₂O and Ba(OH)₂ · 3 H₂O always results in the formation of β-Ba(OH)₂ · 1 H₂O, the stable form of the monohydrates at ambient temperature. Dehydration of β- and γ-Ba(OH)₂ · 1 H₂O, both of which form anhydrous β-Ba(OH)₂ as the first product of decomposition, starts at 105 and 115°C, respectively. Single crystals of Ba(OH)₂ · 3 H₂O and γ-Ba(OH)₂ · 1 H₂O were prepared from Ba(OH)₂ · 8 H₂O meltings and from ethanolic solutions of Ba(OH)₂ , respectively. The crystal data are: Ba(OH)₂ · 3 H₂O (orthorhombic, Pnma): a = 764.0(2), b = 1140,3(5), c = 596.5(1) pm, Z = 4; γ-Ba(OH)₂ · 1 H₂O (monoclinic, P2₁/m or P2₁): a = 704.9(2), b = 418.4(1), c = 633.3(1) pm, β = 111.45(2)°, Z = 2.     

The determination of molybdenum and tungsten in sea and surface water

A simple method for the determination of molybdenum and tungsten in sea and surface water is presented. Molybdenum and tungsten are concentrated on activated charcoal by adsorption as the ammonium pyrrolidine dithiocarbamate complex; the optimal pH for adsorption is 1.3. Mo and W are then determined by thermal neutron activation, forming ⁹⁹Mo (T_{$\text{1}\text{2}$} = 66.7 h) and ¹³⁷W (T_{$\text{1}\text{2}$} = 23.8 h), respectively. The ^99mTc daughter of ⁹⁹Mo is measured as soon as the equilibrium between ^99mTc(T_{$\text{1}\text{2}$}= 6 h) and ⁹⁹Mo is established. The detection limits are 0.05 μg Mo l^-1 and 0.05 μg W l^-1 (or 0.001 μg W l^-1 after a simple chemical separation).