A Convenient Synthesis of ω-[(Arylphosphonomethyl)Amino] Alkylphosphonic and Carboxylic Acids via in Situ–Generated Arylideneaminoalkyl- Phosphonic or Carboxylic Acids

ω-[(Arylphosphonomethyl)amino]alkylphosphonic and carboxylic acids are prepared in an easy work-up procedure, by addition of diethyl phosphite to in situ–generated arylideneaminoalkylphosphonic or carboxylic acids followed by hydrolysis with hydrochloric acid     

Theoretical studies on interactions between low energy electrons and protein-DNA fragments: valence anions of AT-amino acids side chain complexes

Electron attachment to trimeric complexes that mimic most frequent hydrogen bonding interactions between an amino acid side chain (AASC) and the Watson-Crick (WC) 9-methyladenine-1-methylthymine (MAMT) base pair has been studied at the B3LYP/6-31++G(d,p) level of theory. Although the neutral trimers will not occur in the gas phase due to unfavorable free energy of stabilization (G(stab)) they should form a protein-DNA complex where entropy changes related to formation of such a complex will more than balance its disadvantageous G(stab). The most stable neutrals possess an identical pattern of hydrogen bonds (HBs). In addition, the proton-acceptor (N7) and proton-donor (N10) atoms of adenine involved in those HBs are located in the main groove of DNA. All neutral structures support the adiabatically stable valence anions in which the excess electron is localized on a π* orbital of thymine. The vertical detachment energies (VDEs) of anions corresponding to the most stable neutrals are substantially smaller than that of the isolated WC MAMT base pair. Hence, electron transfer from the anionic thymine to the phosphate group and as a consequence formation of a single strand break (SSB) should proceed more efficiently in a protein-dsDNA complex than in the naked dsDNA as far as electron attachment to thymine is concerned.     

Kinetic study of the reaction of CH3O with Br and Br2

The title reactions have been studied at room temperature by applying the discharge flow method coupled with laser induced fluorescence detection of methoxy radicals and resonance fluorescence detection of bromine atoms. The following rate constants were determined: CH₃O + Br Õ products (1) k ₁ (298 K) = (3.4 ± 0.4 (1)) × 10¹³ cm³ mol^-1 s^-1, CH₃O + Br₂ Õ products (2) k ₂ (298 K) £ 5 × 10⁸ cm³ mol^-1 s^-1.     

Synthesis of N-Alkylimino-1,2-di(9-carbazolyl)ethanes-Evidence for the Mechanism of the Reaction of Dichloroacetylene with Primary Amines

Dichloroacetylene (C₂Cl₂) reacts with carbazole and primary amines under phase-transfer catalytic (PTC) conditions to give 1-N-alkylimino-1,2-di(9-carbazolyl)ethanes (I) and 9-((E)-1,2-dichlorovinyl)carbazole (II) in one-step synthesis. Compounds I are formed from the addition of amines to the triple bond of C₂Cl₂ followed by reactions with carbazole.     

Monomer basis-set truncation effects in calculations of interaction energies: A model study

Supermolecular interaction energies are analyzed in terms of the symmetry-adapted perturbation theory and operators defining the inaccuracy of the monomer wave functions. The basis set truncation effects are shown to be of first order in the monomer inaccuracy operators. On the contrary, the usual counterpoise correction schemes are of second order in these operators. Recognition of this difference is used to suggest an approach to corrections for basis-set truncation effects. Also earlier claims--that dimer-centered basis sets may lead to interaction energies free of basis-set superposition effects--are shown to be misleading. According to the present study the basis-set truncation contributions, evaluated by means of the symmetry-adapted perturbation theory with monomer-centered basis sets, provide physically and mathematically justified corrections to supermolecular results for interaction energies.     

Structure and properties of the low-lying electronic states of CeC(2) and CeC(2)(+)

Theoretical studies on the electronic and thermodynamic properties of several electronic states of CeC(2) and CeC(2)(+) have been carried out employing state-of-the-art single- and multireference techniques. The ground and the low-lying electronic states of these two species have been found to possess C(2v) triangular structures. A (3)B(2) state has been found to be the ground state of CeC(2) while for CeC(2)(+) (2)A(2) is the ground state. The computed electron ionization energy is in excellent agreement with experiment. The experimentally observed thermodynamic properties (dissociation and atomization energies) of reactions involving CeC(2) dissociation are corrected using the computed gas-phase properties of the molecule and the partition functions. The bent triplet and singlet state of CeC(2) exhibit large dipole moments (7.0-10.5 D) and it is consistent with the ionic character (through dative charge transfer) of the cluster in ground and excited states.     

How strong can the bend be on a DNA helix from cisplatin? DFT and MP2 quantum chemical calculations of cisplatin-bridged DNA purine bases

The B3LYP/6-31G(d) level of theory was used for the optimization of [Pt(NH(3))(4)](2+), [Pt(NH(3))(3)(H(2)O)](2+), cis-[Pt(NH(3))(2)(H(2)O)(2)](2+), and related platinum complexes. In addition, water or ammonium ligands were replaced by DNA purine bases so that finally cis-diammineplatinum with two bases (Pt-bridged complexes) is obtained. Single point calculations using the MP2/6-31+G(d) method were performed on the obtained reference geometries and were utilized for estimating bond dissociation energies (BDEs) and stabilization energies, and for electron density analyses. After reoptimization, IR spectra were determined from HF second derivatives. It was found that replacement of both water and ammonium by the DNA base is an exothermic process (20-50 kcal/mol depending on the ligands present in the complex). Asymmetric structures with one interbase H-bond were obtained for cis-diammine[bond](N(7),N(7)'-diadenine)[bond]platinum and mixed cis-diammine[bond](N(7)-adenine)[bond](N(7)-guanine)[bond]platinum complexes. In the case of the diguanine Pt-bridge, a symmetrical complex with two ammonium...O(6) H-bonds was found. The higher stabilization energy of the di-guanine complex is linked to a larger component of the Coulombic interaction. However, the BDE of Pt[bond]N(7)(G) is smaller in this complex than the BDE of Pt[bond]N(7)(G) from the mixed Pt[bond]AG complex. Also, steric repulsion of the ligands is about 10 kcal/mol smaller for the asymmetrical Pt[bond]AA and Pt[bond]AG bridges. The influence of the trans effect on DBE can be clearly seen. Adenine exhibits the largest trans effect, followed by guanine, ammonium, and water. The strength of the H-bond can be determined from the IR spectra. The strongest H-bond is the interbase H-bridge between adenine and guanine in the mixed Pt[bond]AG complex; otherwise, the H-bonds of adenine complexes are weaker than in guanine complexes. BDE can be traced in the guanine-containing complexes. The nature of the covalent bonding is analyzed in terms of partial charges and MO. A general explanation of the lower affinity of transition metals to oxygen than nitrogen can be partially seen in the less favorable geometrical orientation of lone electron pairs of oxygen.     

Acyclic congener of cucurbituril: synthesis and recognition properties

The cucurbit[n]uril (CB[n]) family of macrocycles occupies a prominent role in molecular recognition and self-assembly studies despite the current inability to access specific cucurbit[n]uril homologues, derivatives, and analogues by straightforward tailor-made synthetic procedures. In this paper, we explore an approach that circumvents the challenges posed by the tailor-made synthesis of macrocyclic CB[n] by preparing 1, which functions as an acyclic CB[6] congener. The o-xylylene connections to the glycoluril rings preorganize 1 into the (a,a,a,a)-1 conformation required for binding and reduce its tendency to undergo self-association. We surveyed the binding properties of 1 toward 16 amines (K(a) 相似文献   

New evidence on the structure of potassium salts of 12-tungstophosphoric acid, KxH3-xPW12O40

Physicochemical properties and compositions of KxH(3-x)PW12O40 salts, where 2 < or = x < or = 3, have been investigated. It has been found that freshly prepared K2HPW12O40 salt (drying at 313 K) contains particles of heteropolyacid and particles of the neutral potassium salt, the sample being in 78.6% amorphous. On aging at room temperature, the heteropolyacid spreads to form a surface layer covering the neutral potassium salt particles K3PW12O40. Heat treatment of KxH(3-x)PW12O40 salts, where 2 < or = x < 3, from 313 K to higher temperatures induces the transformation of the heteropolyacid-covering K(3) core into a well-dispersed, amorphous surface layer. On further heating of the acidic potassium salts, the surface layer decomposes between 855 and 915 K with the formation of a PW8O26-type bronze as a new phase, the K3PW12O40 salt remaining unchanged. The latter starts to decompose at 1093 K, and in the case of all samples, the process is completed at about 1183 K. Rietveld structure refinement, XPS, and 31P NMR measurements of acidic potassium salts indicate that the core of these salts is always formed by the K3PW12O40 salt, which is covered by a heteropolyacid. Comparison of lattice parameters of the K3 salt and HPW leads to the conclusion that the layer is composed of partially or completely dehydrated heteropolyacid molecules. The coverage of the core by HPW in the K2 sample was estimated to be equal to one monolayer.