Alkylation of nucleic acids by the antitumor agent COMC

[reaction: see text]. Mass spectral data are presented indicating that the antitumor agent 2-crotonyloxymethyl-2-cyclohexenone (COMC) is capable of alkylating oligonucleotides via a mechanism involving an electrophilic exocyclic enone intermediate. Under physiological conditions, the exocyclic enone is likely the glutathionylated 2-exomethylenecyclohexenone. This supports a recent hypothesis that the antitumor activity of COMC arises from alkylation of nucleic acids and/or proteins critical to cell function and not from competitive inhibition of glyoxalase I by an adduct of COMC and glutathione.     

Nucleophilic addition of the thiocyanate ion to ferrocenyl-stabilised carbocations

The reaction of ferrocenylmethylcarbocations with the ambident thiocyanate ion produces only the isothiocyanate isomer.     

A lower bound for the complexity of Craig's interpolants in sentential logic

For any sentenceα (in sentential logic) letd _α be the delay complexity of the boolean functionf _α represented byα. We prove that for infinitely manyd (and starting with somed<620) there exist valid implicationsα→β withd _α,d _β≦d such that any Craig's interpolantx has its delay complexityd _χ greater thand+(1/3)·log(d/2). This is the first (non-trivial) known lower bound on the complexity of Craig's interpolants in sentential logic, whose general study may well have an impact on the central problems of computation theory.     

Probing fragment complementation by rigid-body docking: in silico reconstitution of calbindin D9k

Fragment complementation is gaining an increasing impact as a nonperturbing method to probe noncovalent interactions within protein supersecondary structures. In this study, the fast Fourier transform rigid-body docking algorithm ZDOCK has been employed for in silico reconstitution of the calcium binding protein calbindin D9k, from its two EF-hands subdomains, namely, EF1 (residues 1-43) and EF2 (residues 44-75). The EF1 fragment has been used both in its wild type and in nine mutant forms, in line with in vitro experiments. Consistent with in vitro data, ZDOCK reconstituted the proper fold of wild-type and mutated calbindin, locating the nativelike structures (i.e., holding a root-mean-square deviation < 1 A with respect to the X-ray structure) among the first 10 top-scored solutions out of 4000. Moreover, the three independent in silico reconstitutions of wild-type calbindin ranked a nativelike structure at the top of the output list, that is, the best scored one. The algorithm has been also successfully challenged in reconstituting the EF2 homodimer from two identical copies of the monomer. Furthermore, quantitative models consisting of linear correlations between thermodynamic data and ZDOCK scores were built, providing a tested tool for very fast in silico predictions of the free energy of association of protein-protein complexes solved at the atomic level and known to not undergo significant conformational changes upon binding.     

Partially dynamic maintenance of minimum weight hyperpaths

We address the problem of dynamically maintaining minimum weight hyperpaths in a directed hypergraph in a decremental setting. For such a problem, we provide a new efficient algorithm that works for a wide class of hyperpath weight measures. This algorithm explicitly updates minimum weight hyperpaths in

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worst case time under a sequence of L hyperarc weight increments and hyperarc deletions, where C is the maximum weight of minimum hyperpaths in and is the size of the representation of the hypergraph. Hyperpath weight measures are only required to belong to the class of strict weakly superior functions.     

Nonlinear unbalanced bessel beams: stationary conical waves supported by nonlinear losses

Nonlinear losses accompanying self-focusing substantially impact the dynamic balance of diffraction and nonlinearity, permitting the existence of localized and stationary solutions of the 2D + 1 nonlinear Schr?dinger equation, which are stable against radial collapse. These are featured by linear, conical tails that continually refill the nonlinear, central spot. An experiment shows that the discovered solution behaves as a strong attractor for the self-focusing dynamics in Kerr media.     

Generation and intramolecular reactivity of acyl radicals from alkynylthiol esters under reducing tin-free conditions

[reaction: see text] The radical chain reaction of benzenethiol with alkynylthiol esters provides a new, valuable protocol for the tin-free generation of acyl radicals that arise from intramolecular substitution at sulfur by the initial sulfanylvinyl radicals.     

"Supramolecular" assembly of gold nanorods end-terminated with polymer "pom-poms": effect of pom-pom structure on the association modes

We report a predefined self-organization of gold nanorods (NRs) end-terminated with multiple polymer arms ("pom-poms") in higher-order structures. The assembly of polymer-tethered NRs was controlled by changing the structure of the polymer pom-poms. We show that the variation in the molecular weight of the polymer molecules and their relative location with respect to the long side of the NRs resulted in two competing association modes of the nanorods, that is, their side-by-side and end-to-end assembly, and produced bundles, chains, rings, and bundled chains of the NRs. The superposition of the two variables controlling the organization of NRs allowed us to create a map showing the variation in the longitudinal plasmonic bands of the NRs achieved by their self-assembly.     

<Emphasis Type="Italic">ABCD</Emphasis>-<Emphasis Type="Italic">Tool</Emphasis>, a software suite for the analysis of α/β spectra from liquid scintillation counting

This paper presents the alpha/beta complete deconvolution tool (ABCD-Tool), a C++ application for the analysis of spectra from liquid scintillation counting (LSC) measurements. In addition to the basic algorithms for standard gross alpha/beta analysis and the determination of the counting efficiency, the software implements a recent unfolding technique based on Fourier transforms, which gives precise and reliable results even in the case of complex, strongly overlapping spectra. The application is designed to be used with alpha/beta spectra generated from Perkin Elmer Wallac Quantulus 1220. However, future upgrades are scheduled in order to extend the compatibility to spectra from other LSC instruments in commerce.