Cooperative Competition Clustering for Gene Selection

Clustering analysis of data from DNA microarray hybridization studies is an essential task for identifying biologically relevant groups of genes. Attribute cluster algorithm (ACA) has provided an attractive way to group and select meaningful genes. However, ACA needs much prior knowledge about the genes to set the number of clusters. In practical applications, if the number of clusters is misspecified, the performance of the ACA will deteriorate rapidly. We propose the Cooperative Competition Cluster Algorithm (CCCA) in this paper. In the algorithm, we assume that both cooperation and competition exist simultaneously between clusters in the process of clustering. By using this principle of Cooperative Competition, the number of clusters can be found in the process of clustering. Experimental results on a synthetic and gene expression data are demonstrated. The results show that CCCA can choose the number of clusters automatically and get excellent performance with respect to other competing methods.     

Characterizing the "shell phase" formed from amphiphilic picolinates

The shell phase forms when certain picolinates are subjected to energy input (via sonication or vortexing) while exposed to a water/toluene mixture. A shell, about 600 A thick and containing the picolinate and (very likely) toluene, surround the water droplets that are always produced during the mixing process. Solubility in either phase appears to be deleterious to shell formation. The shells, stable for months, are not easily distorted but can be punctured, even skewered, with a syringe needle without destroying the sphere, yet there is enough mobility among the molecules to repair the physical damage after the needle is removed. This, plus the absence of evidence for crystallinity, suggests a solid or semisolid film forms when picolinates, with the aid of an aromatic solvent, are provided the energy to rearrange themselves on water droplet surfaces. Structure-activity comparisons among the 10 compounds studied indicate that chain-chain association and intermolecular hydrogen bonding are dominant forces in a side-by-side self-assembly of the molecules within the shells.     

Polymeric Structure and Solid ~(31)P, ~(113)Cd NMR Spectra of Cadmium(II) Dialkyldithiophosphate (Alkyl = n-butyl and i-butyl)

Owing to the particular affinity toward metal ion and changeable dentation, dialkyldithiophosphates are commonly used ligands in preparation of the transition metal complexes with variable structures1. For instances relevant to this work, the IIB metal complexes defined crystallographically so far have provided the examples as follows2-12 (Scheme 1). Scheme 1 The frameworks of IIB metal complexes of dialkyldithiophosphate MMMMMMMMMM a b c d …     

Luminescence Quenching between Ce and Eu in LAB3O6

The Ce³⁺ and Eu³⁺ ions in LaB₃O₆ quench each other's luminescence. However, Ce³⁺ quenches Eu³⁺ more effectively than Eu³⁺ quenches Ce³⁺. The critical distances for this quenching are about 15 and 6 Å respectively.     

流动注射电位滴定研究：氟化物沉淀滴定测锂

设计制作了一种简便的梯度混合室,并考察了其性能,试验结果证实了此混合室的合理性和有效性.用此混合室建立了流动注射电位滴定测锂的新方法,载流为1×10~(-5)～1×10~(-4)mol·L~(-1)的F~乙醇-水(9 1)溶液,流速4.2ml·min~(-1),混合室体积400μl,进样体积120μl,分析速度60样·h~(-1),检出范围取决于载流中滴定剂的浓度,方法用于卤水中锂的测定,结果令人满意.     

Hydroxy peroxy nitrites and nitrates from OH initiated reactions of isoprene

The reaction of hydroxy peroxy radicals (RO(2)) with NO represents one of the most crucial tropospheric processes, leading to terrestrial ozone formation or NO(x)() removal and chain termination. We investigate the formation of hydroxy peroxy nitrites (ROONO) and nitrates (RONO(2)) from the OH-isoprene reactions using DFT and ab initio theories and variational RRKM/master equation (vRRKM/ME) formalism. The binding energies of ROONO from NO addition to RO(2) are determined to be in the range of 20-22 kcal mol(-)(1), and the bond dissociation energies of ROONO to form an alkoxy radical (RO) and NO(2) range from 6 to 9 kcal mol(-)(1). Isomerization of ROONO to RONO(2) is exothermic by 22-28 kcal mol(-)(1). The entrance and exit channels of the RO(2)-NO reaction are found to be barrierless, and the rate constants to form ROONO are calculated to be 3 x 10(-)(12) to 2 x 10(-)(11) cm(3) molecule(-)(1) s(-)(1) using the canonical variational transition state theory. The vRRKM/ME analysis reveals negligible stabilization of excited ROONO and provides an assessment of ROONO isomerization to RONO(2).     

ATRP grafting of styrene from benzyl chloride functionalized polysiloxanes: An AFM and TGA study of the Cu(0)/bpy catalyst

Various combinations of Cu(0), CuCl, 2,2′-bipyridine (bpy) and 1,10-phenanthroline (phen) were used as catalysts for the grafting polymerizations of styrene from polysiloxane macroinitiators functionalized with benzyl chloride. While Cu(0)/bpy alone promotes the grafting, narrower polydispersities were obtained in the presence of CuCl. Analysis of the Cu(0) surface before and after polymerization by a combination of AFM, TGA and FTIR investigations reveals the formation of bpy or phen films on Cu(0). In the presence of CuCl, the ligand film appears decorated with CuCl particles which increase in size with increasing the CuCl concentration. The initial layer occurs most likely as a result of complexation between the ligands and the Cu(0) surface and acts as a support for the rest of the film. These observations are consistent with the film formation on Cu(0) from related nitrogen donors and indicate that the reactivity of the Cu surface may depend not only on its prior treatment but also on the deposition of ligands from the reaction mixture.     

Application of Headspace Liquid-Phase Microextraction to the Analysis of Volatile Halocarbons in Water

The determination of four volatile halocarbons (CHCl₃, CCl₄, C₂HCl₃ and C₂Cl₄) in water by headspace liquid-phase microextraction (HS-LPME) with gas chromatography using a micro electron capture detector (GC-μECD) is described. The effects of the type and volume of the extraction solvent, headspace volume, stirring rate, extraction temperature and time and ionic strength on the extraction performance are investigated and optimized. The developed protocol yields a linear calibration curve in the concentration range from 0.05 to 50 µg L^?1 for the target analytes; the detection limits ranged from 0.003 to 0.146 µg L^?1 and the relative standard deviation (R.S.D.) values below 8.45%. The results demonstrate that HS-LPME followed with GC-μECD is a simple and reliable technique for the determination of volatile halocarbons in water samples.     

Study on the Thermodynamic Stabilities of Te-Substituted Di-n-butyltellurium Ylide

SincethediscoveryofphosphoniumylidebyWittig',carbanionsstabilizedbyadjacentfifthorsixthgrouponiumionshavebeendevelopedasavaluablereactiveintermediate.However,despitethegreateffortsinylidechemistryinthepastfewdecades',relativelylittleisknownaboutthethermodynamicstabilitiesofylidecarbanions.Itiswellknowthatthequantitativemeasuresofthecarbanionstabilityhavecontributedagreatdealtothedevelopmentoforganicchemistry,thereforeitshouldbeexpectedthattheknowledgeaboutylidestabilitywillalsoprovidavaluableg…     

Direct Electrochemistry of Hemoglobin Immobilized in Sodium Alginate Film on the Ionic Liquid [BMIM]PF6 Modified Carbon Paste Electrode

In recent years the direct electron transfer of redox protein on electrode surface has attracted great attentions1. Different kind of modified electrode and various supporting films for immobilization of proteins had been proposed. But most of them are ba…