Increasing the sensitivity of Listeria monocytogenes assays: evaluation using ELISA and amperometric detection

An immunosensor for the detection of Listeria monocytogenes was developed. ELISA and amperometric studies were run in parallel to develop a more sensitive and rapid assay for the bacterium. Conditions for the immunosensor were primarily characterised using ELISA. A direct sandwich assay was employed and the affinities of two polyclonal (goat and rabbit) and one monoclonal (mouse) anti-L. monocytogenes antibodies were compared using this format. Owing to low sensitivity being obtained with all antibodies, biotin-avidin amplification and an indirect sandwich assay were employed. The system was then transferred to screen-printed electrodes (SPEs), the primary antibody being immobilised by cross-linking with 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide, and the mode of detection being amperometric. Various parameters (limit of detection, working range, incubation time, cross-reactivity) of the systems were characterised. The effect of direct incubation in milk is also discussed. The final immunosensor had a working range of 1 x 10(6)-1 x 10(3) cells ml-1 and a detection limit of 9 x 10(2) cells ml-1. The assay took about 3.5 h to complete.     

Simplicial collapsibility,discrete Morse theory,and the geometry of nonpositively curved simplicial complexes

Understanding the conditions under which a simplicial complex collapses is a central issue in many problems in topology and combinatorics. Let K be a finite simplicial complex of dimension three or less endowed with the piecewise Euclidean geometry given by declaring edges to have unit length, and satisfying the property that every 2-simplex is a face of at most two 3-simplices in K. Our main result is that if |K| is nonpositively curved [in the sense of CAT(0)] then K simplicially collapses to a point. The main tool used in the proof is Forman’s discrete Morse theory, a combinatorial analog of the classical smooth theory developed in the 1920s. A key ingredient in our proof is a combinatorial analog of the fact that a minimal surface in has nonpositive Gauss curvature.      

Interactions of the complete cellobiohydrolase I from Trichodera reesei with microcrystalline cellulose Iβ

We describe the construction of a model complex of the cellobiohydrolase I (CBH I) cellulase from Trichoderma reesei bound to a cellulose microfibril in an aqueous environment for use in molecular dynamics (MD) simulations. Preliminary characterization from the initial phases of an MD simulation of this complex is also described. The linker sequence between the two globular domains was found to be quite flexible, and the oligosaccharides bound to this linker were found to prefer to be splayed like the spokes in a wheel due to their hydration requirements. The overall conformations of the two globular domains remained stable in the simulations, although both underwent changes in their orientations.     

Fabrication of an ammonia gas sensor using inkjet-printed polyaniline nanoparticles

This work details the fabrication and performance of a sensor for ammonia gas analysis which has been constructed via the inkjet-printed deposition of polyaniline nanoparticle films. The conducting films were assembled on interdigitated electrode arrays and characterised with respect to their layer thickness and thermal properties. The sensor was further combined with heater foils for operation at a range of temperatures. When operated in a conductimetric mode, the sensor was shown to exhibit temperature-dependent analytical performance to ammonia detection. At room temperature, the sensor responded rapidly to ammonia (t₅₀ = 15 s). Sensor recovery time, response linearity and sensitivity were all significantly improved by operating the sensor at temperatures up to 80 °C. The sensor was found to have a stable logarithmic response to ammonia in the range of interest (1-100 ppm). The sensor was also insensitive to moisture in the range from 35 to 98% relative humidity. The response of the sensor to a range of common potential interferents was also studied.     

Supramolecular Recognition: Use of Cofacially Disposed Bis‐terpyridyl Square‐Planar Complexes in Self‐Assembly and Molecular Recognition

A molecular receptor consisting of a molecular spacer that constrains two terpyridyl‐palladium(II) complexes to be disposed in a parallel cofacial geometry has been prepared. The separation between the two terpyridyl‐palladium units is enforced to be ca. 7 Å, a distance sufficient to incarcerate aromatic molecules and square‐planar complexes. A number of molecules are shown to associate with this spacer‐chelator complex. In particular, 9‐methylanthracene (9‐MA) is found to form a 1 : 2 host‐guest complex. A crystal structure of this complex shows one 9‐MA in the molecular cleft formed by the two terpyridyl‐palladium units and the other 9‐MA molecule to lie above one of the terpyridyl‐palladium units. Nuclear Overhauser effects on analogous molecules that contain two anthracene guests tethered intramolecularly indicate that the structure found in the solid is similar to that in solution. Low‐temperature ¹H‐NMR studies indicate rapid exchange between the two binding sites. The spacer‐chelator complexes, when combined with appropriate molecular linkers, readily form molecular rectangles, trigonal prisms, and tetragonal prisms. One molecular rectangle is shown to associate with up to five 9‐MA molecules.     

The position dependent 15N enrichment of nitrous oxide in the stratosphere.

The position dependent 15N fractionation of nitrous oxide (N2O), which cannot be obtained from mass spectrometric analysis on molecular N2O itself, can be determined with high precision using isotope ratio mass spectrometry on the NO+ fragment that is formed on electron impact in the source of an isotope ratio mass spectrometer. Laboratory UV photolysis experiments show that strong position dependent 15N fractionations occur in the photolysis of N2O in the stratosphere, its major atmospheric sink. Measurements on the isotopic composition of stratospheric N2O indeed confirm the presence of strong isotope enrichments, in particular the difference in the fractionation constants for 15N14NO and 14N15NO. The absolute magnitudes of the fractionation constants found in the stratosphere are much smaller, however, than those found in the lab experiments, demonstrating the importance of dynamical and also additional chemical processes like the reaction of N2O with O(1D).     

The calculation of free electron density in Cassandra

Cassandra is an AWE opacity code used to model plasmas in local thermal equilibrium: there is a desire to expand its use to calculating plasma equations of state. Cassandra's self-consistent field calculation (scf) uses the local density approximation for bounds states and has a free electron contribution based upon the Thomas-Fermi model [B.J.B. Crowley et al., J. Quant. Spectro. Radiat. Trans. 71, 257(2001)]. Whilst this is applicable for very high temperature or low density plasmas; in hot and dense matter the effect of ionization will lead to discontinuities in the effective ionisation, Z^?. The electron contribution to hydrostatic pressure is associated with Z^?, thus these discontinuities produce unphysical jumps in the resulting calculated material pressure.We describe a procedure to mitigate the effect by calculating the free electron wave functions within the generalized ion-cell model [B.J.B. Crowley et al., Phys. Rev. A 41, 2179(1990)], and thus explicitly calculate free-electron resonances.     

Measurements of emission spectra from hot,dense germanium plasma in short pulse laser experiments

Heating of thin foil targets by an high power laser at intensities of 10¹⁷–10¹⁹ W/cm² has been studied as a method for producing high temperature, high density samples to investigate X-ray opacity and equation of state. The targets were plastic (parylene-N) foils with a microdot made of a mixture of germanium and titanium buried at depth of 1.5 μm. The L-shell spectra from the germanium and the K-shell spectra from the titanium were taken using crystal spectrometers recording onto film and an ultra fast X-ray streak camera coupled to a conical focussing crystal with a time resolution of 1 ps. The conditions in the microdot were inferred by comparing the measured spectra to synthetic spectra produced by the time-dependent collisional–radiative (CR) models FLY and FLYCHK. The data were also compared to simulated spectra from a number of opacity codes assuming local thermodynamic equilibrium (LTE). Temperature and density gradients were taken into account in the comparisons. The sample conditions were inferred from the CR modelling using FLYCHK to be 800 ± 100 eV and 1.5 ± 0.5 g/cc. The best fit to the LTE models was at a temperature 20% lower than with the CR model. Though the sample departs from LTE significantly useful spectral comparisons can still be made. The results and comparisons are discussed along with improvements to the experimental technique to achieve conditions closer to LTE.     

Interaction of formic and acetic acid with ice surfaces between 187 and 227 K. Investigation of single species- and competitive adsorption

The physical adsorption of formic (HC(O)OH) and acetic (CH(3)C(O)OH) acid on ice was measured as a function of concentration and temperature. At low concentrations, the gas-ice interaction could be analysed by applying Langmuir adsorption isotherms to determine temperature dependent partition constants, K(Lang). Using temperature independent saturation coverages (N(max)) of (2.2 +/- 0.5) x 10(14) molecule cm(-2) and (2.4 +/- 0.6) x 10(14) molecule cm(-2) for HC(O)OH and CH(3)C(O)OH, respectively, we derive K(Lang)(HC(O)OH) = 1.54 x 10(-24) exp (6150/T) and K(Lang)(CH(3)C(O)OH) = 6.55 x 10(-25) exp (6610/T) cm(3) molecule(-1). Via a van't Hoff analysis, adsorption enthalpies were obtained for HC(O)OH and CH(3)C(O)OH. Experiments in which both acids or HC(O)OH and methanol interacted with the ice surface simultaneously were adequately described by competitive adsorption kinetics. The results are compared to previous measurements and used to calculate the equilibrium partitioning of these trace gases to ice surfaces under conditions relevant to the atmosphere.     

Theoretical investigation of product channels in the CH3O2 + Br reaction

Several reaction pathways on the potential energy surface (PES) for the reaction of CH3O2 radicals with Br atoms are examined using both ab initio and density functional methods. Analysis of the PES suggests the presence of the stable intermediates CH3OOBr and CH3OBrO. CH3OOBr is calculated to be more stable than CH3OBrO by 9.7 kcal mol(-1) with a significant barrier preventing formation of CH3OBrO via isomerization of CH3OOBr. The relative importance of bi- and termolecular product channels resulting from the initially formed CH3OOBr adduct are assessed based on calculated barriers to the formation of CH2OO + HBr, CH3O + BrO, CH3Br + O2, and CH2O + HOBr.