Predicting the behaviour of proteins in hydrophobic interaction chromatography. 1: Using the hydrophobic imbalance (HI) to describe their surface amino acid distribution

This paper focuses on the prediction of the dimensionless retention time of proteins (DRT) in hydrophobic interaction chromatography (HIC) by means of mathematical models based on characteristics of the surface hydrophobicity distribution. We introduce a new parameter, called hydrophobic imbalance (HI), obtained from the three-dimensional structure of proteins. This parameter quantifies the displacement of the superficial geometric centre of the protein when the effect of the hydrophobicity of each amino acid is considered. This parameter is simpler and less expensive than those reported previously. We use HI as a way to incorporate information about the surface hydrophobicity distribution in order to improve the prediction of DRT. We tested the performance of our DRT predictive models in a set of 15 proteins. This set includes four proteins whose DRTs are known as very difficult to predict. By means of the variable HI, it was possible to improve the predictive characteristics obtained by models based on the average surface hydrophobicity (ASH) by 9.1%. Also, we studied linear multivariable models based on characteristics determined from the HI. By using this multivariable model, a correlation coefficient of 0.899 was obtained. With this model, we managed to improve the predictive characteristics shown by previous models based on ASH by 31.8%.     

On non-solvable Camina pairs

In this paper we study non-solvable and non-Frobenius Camina pairs (G,N). It is known [D. Chillag, A. Mann, C. Scoppola, Generalized Frobenius groups II, Israel J. Math. 62 (1988) 269–282] that in this case N is a p-group. Our first result (Theorem 1.3) shows that the solvable residual of G/O_p(G) is isomorphic either to SL(2,p^e),p is a prime or to SL(2,5), SL(2,13) with p=3, or to SL(2,5) with p7.Our second result provides an example of a non-solvable and non-Frobenius Camina pair (G,N) with |O_p(G)|=5⁵ and G/O_p(G)SL(2,5). Note that G has a character which is zero everywhere except on two conjugacy classes. Groups of this type were studies by S.M. Gagola [S.M. Gagola, Characters vanishing on all but two conjugacy classes, Pacific J. Math. 109 (1983) 363–385]. To our knowledge this group is the first example of a Gagola group which is non-solvable and non-Frobenius.     

Reduction of alkyl and vinyl sulfonates using the CuCl2·2H2O-Li-DTBB(cat.) system

The reduction of a series of alkyl mesylates, dimesylates and triflates to the corresponding hydrocarbons was efficiently performed using a reducing system composed of CuCl₂·2H₂O, an excess of lithium sand and a catalytic amount (5 mol%) of 4,4′-di-tert-butylbiphenyl (DTBB), in tetrahydrofuran at room temperature. The process was also applied to enol and dienol triflates affording alkenes and dienes, respectively. The use of the deuterated copper salt CuCl₂·2D₂O allowed the simple preparation of the corresponding deuterated products.     

Accurate intermolecular ground-state potential-energy surfaces of the HCCH-He, Ne, and Ar van der Waals complexes

Accurate ground-state intermolecular potential-energy surfaces are obtained for the HCCH-He, Ne, and Ar van der Waals complexes. The interaction energies are calculated at the coupled cluster singles and doubles including connected triple excitations level and fitted to analytic functions. For the three complexes we start with systematic basis set studies carried out at several intermolecular geometries, and using augmented correlation consistent polarized valence basis sets x-aug-cc-pVXZ (x=-,d; X=D,T,Q,5), also extended with a set of 3s3p2d1f1g midbond functions. The aug-cc-pVQZ-33211 surfaces of HCCH-He, Ne, and Ar complexes are characterized by absolute minima of -24.22, -50.20, and -122.17 cm(-1) at distances R between the rare-gas atom and the HCCH centers of mass of 4.35, 3.95, and 3.99 A, respectively; and at angles between the vector R and the HCCH main symmetry axis of 0 degrees , 43.3 degrees , and 60.6 degrees . The results are compared and considerably improve those previously available.     

N-Glycomics of Cerebrospinal Fluid: Method Comparison

Cerebrospinal fluid (CSF) contains valuable biological and neurological information. However, its glycomics analysis is hampered due to the low amount of protein in the biofluid, as has been demonstrated by other glycomics studies using a substantial amount of CSF. In this work, we investigated different N-glycan sample preparation approaches to develop a more sensitive method. These methods, one with an increased amount of buffer solution during the N-glycan release step with a lower amount of sample volume and the other with Filter-Aided N-Glycan Separation (FANGS), were compared with recent work to demonstrate their effectiveness. It was demonstrated that an increased amount of buffer solution showed higher intensity in comparison to the previously published method and FANGS. This suggested that digestion efficiency during the N-glycan release step was not in an optimal condition from the previously published method, and that there is a substantial loss of sample with FANGS when preparing N-glycans from CSF.     

A direct method for the decontamination of a fly ash amended wet soil,artificially polluted with dioxins

We report hereby the first method of direct treatment of a wet soil containing toxic polychloroderivatives. Using a system with metallic Ca and 5% Rh fixed on charcoal in methanol, soil samples artificially polluted with fly ash containing polychloro-dibenzodioxins (PCDDs), polychloro-dibenzofurans (PCDFs) and coplanar polychlorinated biphenyls (co-PCBs), and having 69.2% to 84.6% moisture content, were successfully treated and decontaminated. This treatment afforded excellent hydrodechlorination yields for the 29 most toxic congeners of PCDDs, PCDFs and PCBs (98.3% degradation yield based on toxic equivalent quotient — or TEQ) after a 24 h treatment, at room temperature.      

Thermal behaviour and spectroscopic studies of complexes of some divalent transitional metals with 2-benzoil-pyridil-izonicotinoylhydrazone

New complexes of 2-benzoyl-pyridil-isonicotinoylhydrazone (L) with Cu(II), Co(II), Ni(II) and Mn(II), having formula of type [ML₂] SO₄·xH₂O (M = Cu²⁺, Co²⁺, Ni²⁺, x = 2 and M = Mn²⁺, x = 3), have been synthesised and characterised. All complexes were characterised on the basis of elemental analyses, IR spectroscopy, UV–VIS–NIR, EPR, as well as thermal analysis and determination of molar conductivity and magnetic moments. The thermal behaviour of complexes was studied using thermogravimetry (TG), differential thermal analysis (DTA) and differential scanning calorimetry (DSC). The structure of L hydrazone was established by X-ray study on single crystal. The ligand works as tridentate NNO, being coordinated through the azomethine nitrogen, the pyridine nitrogen and carbonylic oxygen. Heats of decomposition, ΔH, associated with the exothermal effects were also determined.     

Highly Efficient Redox Isomerisation of Allylic Alcohols Catalysed by Pyrazole‐Based Ruthenium(IV) Complexes in Water: Mechanisms of Bifunctional Catalysis in Water

The catalytic activity of ruthenium(IV) ([Ru(η³:η³‐C₁₀H₁₆)Cl₂L]; C₁₀H₁₆=2,7‐dimethylocta‐2,6‐diene‐1,8‐diyl, L=pyrazole, 3‐methylpyrazole, 3,5‐dimethylpyrazole, 3‐methyl‐5‐phenylpyrazole, 2‐(1H‐pyrazol‐3‐yl)phenol or indazole) and ruthenium(II) complexes ([Ru(η⁶‐arene)Cl₂(3,5‐dimethylpyrazole)]; arene=C₆H₆, p‐cymene or C₆Me₆) in the redox isomerisation of allylic alcohols into carbonyl compounds in water is reported. The former show much higher catalytic activity than ruthenium(II) complexes. In particular, a variety of allylic alcohols have been quantitatively isomerised by using [Ru(η³:η³‐C₁₀H₁₆)Cl₂(pyrazole)] as a catalyst; the reactions proceeded faster in water than in THF, and in the absence of base. The isomerisations of monosubstituted alcohols take place rapidly (10–60 min, turn‐over frequency=750–3000 h^?1) and, in some cases, at 35 °C in 60 min. The nature of the aqueous species formed in water by this complex has been analysed by ESI‐MS. To analyse how an aqueous medium can influence the mechanism of the bifunctional catalytic process, DFT calculations (B3LYP) including one or two explicit water molecules and using the polarisable continuum model have been carried out and provide a valuable insight into the role of water on the activity of the bifunctional catalyst. Several mechanisms have been considered and imply the formation of aqua complexes and their deprotonated species generated from [Ru(η³:η³‐C₁₀H₁₆)Cl₂(pyrazole)]. Different competitive pathways based on outer‐sphere mechanisms, which imply hydrogen‐transfer processes, have been analysed. The overall isomerisation implies two hydrogen‐transfer steps from the substrate to the catalyst and subsequent transfer back to the substrate. In addition to the conventional Noyori outer‐sphere mechanism, which involves the pyrazolide ligand, a new mechanism with a hydroxopyrazole complex as the active species can be at work in water. The possibility of formation of an enol, which isomerises easily to the keto form in water, also contributes to the efficiency in water.     

Coinage metal complexes with N’NN’ and SeNSe ligands – Pincer vs bridging coordination pattern

The reactions of the ligands 2,6-(Me₂NCH₂)₂C₅H₃N (N’NN’) (1) and 2,6-(PhSeCH₂)₂C₅H₃N (SeNSe) (4) with different coinage metal starting materials gave 1:1, 2:1 or 1:2 metal-to-ligand species, i.e. [Ag(N’NN’){O(O)CCF₃}] (2), [{Ag(PPh₃)}₂(N’NN’)](OTf)₂ (3), [Au(SeNSe)Cl]Cl₂ (5), [Ag(PPh₃)(SeNSe)](OTf) (6), [Cu(MeCN)(SeNSe)](PF₆) (7) or [Cu(SeNSe)₂](PF₆) (8). The new compounds were investigated by IR, multinuclear NMR spectroscopies as well as mass spectrometry. In most cases, the ligands 1 and 4 act as pincer ligands. An attempt to grow single crystals of 2 gave an unexpected result. The crystal investigated by X-ray diffraction proved to be a polynuclear species, [Ag₄(N’NN’){O(O)CCF₃}₄(EtOH)]_n (2a), which contains an unusual, bimetallic triconnective coordination pattern of the N’NN’ ligand. Two tetranuclear [Ag₄(N’NN’){O(O)CCF₃}₄(EtOH)] units form centrosymmetric dimers further associated into a polymer which contains four different coordination environments around silver atoms. The complex 3, in which the ligand also exhibits a bimetallic triconnective pattern, shows an intense, long-lived luminescence in the solid state with emission energies in the green region of the visible spectrum.     

Synthesis, spectral and thermal studies of new copper (II) complexes with 1,2-di(imino-2-aminomethylpyridil)ethane

New copper (II) complexes of Schiff bases with 1,2-di(imino-2-aminomethylpyridil)ethane with the general composition CuLX _m (H₂O) _x , [L = Schiff base, X = Cl^?, Br^?, NO₃ ^?, ClO₄ ^?, CH₃COO^?, m = 2; X = SO₄ ^2?, m = 1] were prepared by template synthesis. The complexes were characterized by elemental analysis, conductivity measurements, magnetic moments, IR, UV–VIS and EPR spectra. The thermal behavior of complexes was studied using thermogravimetry (TG), differential thermal analysis (DTA) and differential scanning calorimetry (DSC). Infrared spectra of all complexes are in good agreement with the coordination of a neutral tetradentate N₄ ligand to the cooper (II) through azomethinic and pyridinic nitrogen. Magnetic, EPR and electronic spectral studies show a monomeric distorted octahedral geometry for all Cu(II) complexes. Conductance measurements suggest the non-electrolytic nature of the compounds, except for copper (II) nitrate and perchlorate complexes which are 1:2 electrolytes. Heats of decomposition, ΔH, associated with the exothermal effects were also determined.