Enhancing the selectivity of an iron binding hydrogel

Iron overload is a critical clinical condition that can be controlled by diet and the use of iron-specific chelating agents. An effective oral formulation of an iron chelator should be nontoxic and selective toward iron while maintaining high affinity for iron. In this study, hydrogels containing 2,3 dihydroxybenzoic acid (2,3 DHBA), a portion of the metal chelating domain of enterobactin, were synthesized as a potential non-absorbed chelator for iron in the gastrointestinal tract. A series of polymeric chelators with various hydrogel:DHBA ratios were prepared. The iron-binding properties of the hydrogels were found to depend on the concentration of 2,3 DHBA groups on polymer chains. A 0.005 ratio of PAAm:DHBA was found to have an optimum affinity (log K = 27.01), selectivity, and high binding capacity for Fe(III).     

A study of quantum error correction by geometric algebra and liquid-state NMR spectroscopy

Quantum error correcting codes enable the information contained in a quantum state to be protected from decoherence due to external perturbations. Applied to NMR, this procedure does not alter normal relaxation, but rather converts the state of a 'data' spin into multiple quantum coherences involving additional ancilla spins. These multiple quantum coherences relax at differing rates, thus permitting the original state of the data to be approximately reconstructed by mixing them together in an appropriate fashion. This paper describes the operation of a simple, three-bit quantum code in the product operator formalism, and uses geometric algebra methods to obtain the error-corrected decay curve in the presence of arbitrary correlations in the external random fields. These predictions are confirmed in both the totally correlated and uncorrelated cases by liquid-state NMR experiments on ¹³C-labelled alanine, using gradient-diffusion methods to implement these idealized decoherence models. Quantum error correction in weakly polarized systems requires that the ancilla spins be prepared in a pseudo-pure state relative to the data spin, which entails a loss of signal that exceeds any potential gain through error correction. Nevertheless, this study shows that quantum coding can be used to validate theoretical decoherence mechanisms, and to provide detailed information on correlations in the underlying NMR relaxation dynamics.     

Exploring the activation of olefin polymerisation catalysts with density functional theory

Density Functional Theory has been used to study the activation of different olefin polymerisation catalysts by different activators. The results show that biscyclopentadienyl catalyst systems would act as the best catalysts and the activators of the type [CPh₃⁺][A⁻] would be the best at activating such systems. The competition between different species present in solution for the vacant active site in the catalyst was studied for the [(1,2Me₂Cp)₂ZrMe⁺][B(C₆F₅)₃CH₃⁻] system and the pre‐catalyst and AlMe₃ were found to be the compounds most likely to form dormant products in solution.     

An ab initio investigation of lithium ion hydration. II. Tetra‐ versus hexacoordination and halide complexes

The geometries and vibrational frequencies of Li(H₂O), n=4, 5, 6, 8, 18, and LiX(H₂O)_n, X=F, Cl, Br, I; n=3, 6 are calculated at various levels up to MP2/6‐31+G*. The solution structure and vibrational spectra with noncoordinating counterions are most consistent with our tetracoordinate lithium species. The solution spectra of lithium chloride and bromide solutions are consistent with our predicted spectra of ion pairs. It is shown that, to model the Li X vibrational mode correctly, both the lithium and halogen must be solvated with a sufficient number of waters. © 1999 John Wiley & Sons, Inc. Int J Quant Chem 76: 62–76, 2000     

Chain extension of amino acid skeletons: preparation of ketomethylene isosteres

Ketomethylene isosteric replacements for peptide bonds were generated through a zinc carbenoid-mediated chain extension reaction in which a variety of amino acid-derived β-keto esters are converted to γ-keto esters in a single step. The reaction tolerates a variety of protecting groups and amino acid side chains with no epimerization of the amino acid stereocenter.     

Mechanism and scope of the cyanide-catalyzed cross silyl benzoin reaction

In this work, cross silyl benzoin addition reactions between acylsilanes (1) and aldehydes (2) catalyzed by metal cyanides are described. Unsymmetrical aryl-, heteroaryl-, and alkyl-substituted benzoin adducts can be generated in moderate to excellent yields with complete regiocontrol using potassium cyanide and a phase transfer catalyst. From a screen of transition metal cyanide complexes, lanthanum tricyanide was identified as an improved second-generation catalyst for the cross silyl benzoin reaction. A study of the influence of water on the KCN-catalyzed cross silyl benzoin addition revealed more practical reaction conditions using unpurified solvent under ambient conditions. A sequential silyl benzoin addition/cyanation/O-acylation reaction that resulted in two new C-C bonds was achieved in excellent yield. The mechanism of cross silyl benzoin addition is proposed in detail and is supported by crossover studies and a number of unambiguous experiments designed to ascertain the reversibility of key steps. No productive chemistry arises from cyanation of the more electrophilic aldehyde component. Formation of the carbon-carbon bond is shown to be the last irreversible step in the reaction.     

Linear hybrid aminoborane/phosphinoborane chains: synthesis, proton-hydride interactions, and thermolysis behavior

The reaction of the lithiated phosphine-borane adducts Li[PPhR.BH(3)] or Li[CH(2)-PR(2).BH(3)] with Me(2)NH.BH(2)Cl afforded the hybrid linear species Me(2)NH-BH(2)-PPhR-BH(3) (1, R = Ph; 2, R = H) or Me(2)NH-BH(2)-CH(2)-PR(2)-BH(3) (3, R = Ph; 4, R = Me). Single-crystal X-ray diffraction studies on 1 and 3, the first for linear hybrid aminoborane/phosphinoborane adducts, confirmed the expected four-coordinate N-B-P-B and N-B-C-P-B frameworks. In addition, interactions between the protic N-H and hydridic B-H hydrogen atoms resulted in short intermolecular H...H contacts for 1, whereas 3 was found to possess an exceptionally short intramolecular H...H distance of 1.95 A. Solution and solid state infrared studies on 3 and 4 also suggest that these dihydrogen interactions were maintained even in dilute solution. Hydrogen bond strengths in the range of 7.9 to 10.9 kJ mol(-1) indicate the presence of a relatively weak interaction. The thermal and catalytic dehydrocoupling reactivities of 1-4 were also investigated. Chain cleavage reactions were observed for 1 and 2 upon thermolysis at 130 degrees C to afford species such as Me(2)NH.BH(3), [Me(2)N-BH(2)](2), PhPRH.BH(3) (R = Ph, H), PhPRH (R = Ph, H), Ph(2)PH-BH(2)-PPh(2)-BH(3), and also the low molecular weight polyphosphinoborane [PhPH-BH(2)](n) (M(w) approximately 5000). Similar products were observed for the attempted catalytic dehydrocoupling reactions but under milder reaction conditions (50 degrees C). Thermolysis of 3 at 130 degrees C yielded the six-membered ring [BH(2)-CH(2)-PPh(2)](2) (5), which presumably results from the dissociation of Me(2)NH.BH(3) from 3. Thermolysis of 4 at 90 degrees C afforded Me(2)NH.BH(3) and Me(3)P.BH(3), in addition to a product tentatively assigned as [BH(2)-CH(2)-PMe(2)](2) (6).     

High sensitivity PCR assay in plastic micro reactors

Small volume operation and rapid thermal cycling have been subjects of numerous reports in micro reactor chip development. Sensitivity aspects of the micro PCR reactor have not been studied in detail, however, despite the fact that detection of rare targets or trace genomic material from clinical and/or environmental samples has been a great challenge for microfluidic devices. In this study, a serpentine shaped thin (0.75 mm) polycarbonate plastic PCR micro reactor was designed, constructed, and tested for not only its rapid operation and efficiency, but also its detection sensitivity and specificity, in amplification of Escherichia coli (E. coli) K12-specific gene fragment. At a template concentration as low as 10 E. coli cells (equivalent to 50 fg genomic DNA), a K12-specific gene product (221 bp) was adequately amplified with a total of 30 cycles in 30 min. Sensitivity of the PCR micro reactor was demonstrated with its ability to amplify K12-specific gene from 10 cells in the presence of 2% blood. Specificity of the polycarbonate PCR micro reactor was also proven through multiplex PCR and/or amplification of different pathogen-specific genes. This is, to our knowledge, the first systematic study of assay sensitivity and specificity performed in plastic, disposable micro PCR devices.     

Atmospheric pressure chemical ionization and atmospheric pressure photoionization for simultaneous mass spectrometric analysis of microbial respiratory ubiquinones and menaquinones

An atmospheric pressure photoionization (APPI) source and an atmospheric pressure chemical ionization (APCI) source were compared for the selective detection of microbial respiratory ubiquinone and menaquinone isoprenologues using tandem mass spectrometry. Ionization source- and compound mass-dependent parameters were optimized individually for both sources, using the available quinone standards. Detection levels for the two ion sources were determined with ubiquinone-6 (UQ6) and menaquinone-4 (MK4, vitamin K2) standards using flow injection analysis and selected reaction monitoring (SRM). With APPI the calculated lower limit of detection (LLOD) was 1.7 fmol microl(-1) for UQ6 and 2.2 fmol microl(-1) for MK4 at a signal-to-noise ratio of 3. These LLODs were at least three times lower than with APCI. The selectivity of detection afforded by SRM detection reduced complex mixture analysis to 3 min per sample by eliminating the need for chromatographic separations. The detection method was successfully applied to quinone quantification in a variety of environmental samples and cell cultures. Adequate amounts of respiratory quinones can be extracted and quantified from samples containing as low as 2 x 10(7) cells.