Minimization of empirical energy functions in proteins including hydrophobic surface area effects

We present analytical expressions to calculate the gradient of the water-accessible surface area of proteins with respect to Cartesian coordinates and dihedral angles. A detailed mathematical analysis leads to corrected equations for the gradient calculation used previously in the ANAREA program. To study the hydrophobic effect of solvent-protein interactions, our expressions have been implemented to further improve the program package FANTOM. We used this version of FANTOM to minimize the ECEPP/2 and the hydrophobic energy of tendamistat. © 1993 John Wiley & Sons, Inc.     

The Structure of the Antibiotic Hedamycin. I. Chemical,Physical and Spectral Properties

Interpretation of the chemical and spectral (IR., UV., ¹H- and ¹³C-NMR.) properties of the antitumor antibiotic hedamycin (C₄₁H₅₀N₂O₁₁) suggests that the molecule contains a methyl substituted 1-hydroxyanthraquinone nucleus, an α, β-unsaturated ketone, two sugar-like tetrahydropyran rings ( 4 and 8 ) and an aliphatic chain 2 , presumably with an epoxy group (see the Scheme).     

Photochemische synthese von H2Fe3-komplexen und ihre aktivität bei der photokatalytischen hydrierung von olefinen und dienen

The photochemical reaction of the trinuclear complex Fe₃(CO)₁₀NSi(CH₃)₃ under hydrogen leads to substitution of the bridging carbonyl group by two hydrogens. The resulting complex H₂Fe₃(CO)₉NSi(CH₃)₃ acts as a catalyst in the photochemical hydrogenation of olefins and dienes.     

Optimization of an electrolytic conductivity detector for determination of toxic nitrogen-containing food contaminants separated by open tubular column gas chromatography

The combination of open tubular column gas chromatography with electrolytic conductivity detection has been evaluated for the determination of nitrogen-containing pesticide residues in food extracts. Optimization of the column position at the column-detector interface was crucial to the successful operation of the detector. The signal-to-noise ratio and response stability of the detector are greatly influenced by the composition of the electrolyte solvent. Large volume splitless injections using retention gaps and optimized detector operating conditions enabled pesticide residues in food extracts to be determined at sub parts-per-million levels. Although the electrolytic conductivity detector is less sensitive than the thermionic ionization detector, its greater nitrogen selectivity can he crucial to the determination of nitrogen-containing contaminants in food extracts, particularly in complex mixtures where phosphorus-containing contaminants or matrix compounds are also present.     

A universal temperature controlled membrane interface for the analysis of volatile and semi-volatile organic compounds

A universal temperature controlled membrane interface (TCMI) has been constructed for hollow-fibre membranes. The membrane temperature is controllable in the range -70 to 250 degrees C using an electric heater and a flow of cooled nitrogen or helium gas. Volatile and semi-volatile organic compounds may be detected either by continuous diffusion across the membrane or by in-membrane pre-concentration followed by thermal desorption into the detector. The TCMI interface is demonstrated in combination with mass spectrometry and GC-MS, for the determination of VOCs and SVOCs in aqueous and air samples and for the on-line monitoring of a bioreactor.     

1.5-Diaza-3.7-diphospha-cyclooctane

The alkyl (aryl)-bishydroxymethylphosphines react with primary amines to give the title compounds. With optically active amines optically active phosphines are formed.     

X=Y=ZH Systems as potential 1,3-dipoles. Part 58: Cycloaddition route to chiral conformationally constrained (R)-pro-(S)-pro peptidomimetics

Imines of (1S,9S)-t-butyl-9-amino-octahydro-6,10-dioxo-6H-pyridazino[1,2-a][1,2]diazepine-1-carboxylate undergo thermal (toluene, 110°C) or LiBr-DBU catalysed (MeCN, room temperature) regio- and stereo-specific cycloaddition to a range of chiral dipolarophiles giving enantiopure spiro-cycloadducts in excellent yield. The reactions proceed via intermediate NH azomethine ylides and litho azomethine ylides, respectively and results in the multiplication of chiral centres from 2 (one of which is lost in the process) to 5.     

Protonation and methylation of η-2,3,5,6-tetramethyl-1,4-benzoquinone(η-pentamethylcyclopentadienyl)cobalt

The preparation of the η⁴-4-2,3,5,6-tetramethyl-1,4-benzoquinonecomplex [CO(C₅Me₅)(C₁₀H₁₂O₂)] (I) is reported. Complex I undergoesreversible protonation to yield the 2-6-η-4-hydroxy-1-oxo-2,3,5,6-tetramethylcyclohexadienyl complex [Co(C₅Me₅)(C₁₀H₁₃O₂)BF₄ (II) and diprotonation to yield the η⁶-6-1,4-dihydroxy-2,3,5,6-tetramethylbenzene complex [Co(C₅Me₅)(C₁₀H₁₄O₂)] (BF₄)₂ (III). Methylation of complex I with MeI/AgPF₆ gives the 2---6-η-4-methoxy-1-oxo-2,3,5,6-tetramethylcyclohexadienyl complex [Co(C₅Me₅)(C₁₁H₁₅O₂])PF₆ (IV). In trifluoroacetic acid solution complex IV is protonated to form the η⁶-1-hydroxy-4-methoxy-2,3,5,6-tetramethylbenzene cation [Co(C₅Me₅)-(C₁₁H₁₆O₂)]²⁺     

Application of significant structures theory to amorphous polyethylene

The thermodynamic properties of amorphous polyethylene are calculated from a model based on the method of significant structures. The motion of a molecule as a whole is described by the motion of segments, each segment moving independently of all others. It is assumed that on melting, holes appear in the solid lattice and the segments can move into these vacancies, obtaining some gaslike degrees of freedom. The complete frequency distribution for polyethylene is used for the solidlike degrees of freedom, while a corrected classical partition function is used for the gaslike degrees of freedom. The calculated thermodynamic properties are in reasonable agreement with experimentally determined values, assuming each gaslike segment to consist of 20 CH₂ groups.