Stereoselection in the Prins-pinacol synthesis of acyltetrahydrofurans

[reaction: see text]. Depending upon the nature of the alkene and allylic substituents, acid-promoted rearrangements of acetals derived from anti allylic diols give 12 or stereoisomeric acyltetrahydrofurans 13. Stereoelectronic effects of the allylic substituents and the extent of bonding in the Prins cyclization transition state are central features of a proposed new model for predicting stereoselection in the Prins-pinacol synthesis of acyltetrahydrofurans.     

THERMODYNAMICS OF PORPHYRIN BINDING TO SERUM ALBUMIN: EFFECTS OF TEMPERATURE, OF PORPHYRIN SPECIES and OF ALBUMIN-CARRIED FATTY ACIDS

Abstract Porphyrin binding to serum albumin was studied at the molecular level probing the effects of: porphyrin self-aggregation, porphyrin species, temperature and protein-bound fatty acids. Human serum albumin was found to have a single high-affinity site for porphyrin monomers, with binding constants of 2 x 10⁶, 5 x 10⁷ and 3 x 10⁸ (37^o C, neutral pH, M ⁻¹), for hemato-, deutero- and protoporphyrins, respectively. Three equilibria models for the dimer binding were developed and tested. The data were found to fit best with a model proposing a single high-affinity binding site for the dimer, independent of and different than the monomer site. The binding constants of the hematoporphyrin and deuteroporphyrin dimers to human serum albumin (37^o C, neutral pH, M^−l) being 4 x 10* and 5 x 10⁸ respectively. The temperature dependence (Dp and HSA, 22-37^o C) of the monomer binding showed the process to be entropy-driven (δG^o= -45 kJ mol⁻¹; δS^o=+146 kJ mol⁻¹; δH^o= 0 kJ mol⁻¹). For the dimer binding, the enthalpy change was found to be highly temperature-dependent implying continuous changes in the heat capacity of the system over the entire temperature range, the trend at the 37^o C region fitting an entropy-driven process. The monomer vs dimer differences in temperature dependence strongly support separate and independent binding sites for these species. Similar thermodynamics were determined for fatty-acid carrying as well as for fatty-acid free HSA, with mild quantitative (but not qualitative) shifts.     

Chemical and biological caging effects on the relaxation of a proton-transfer dye

We report studies of the interaction between a proton-transfer dye (1'-hydroxy,2'-acetonaphthone, HAN), with the human serum albumin (HSA) protein and a beta-cyclodextrin derivative (DM-beta-CD) in neutral water solutions. We used steady-state and picosecond time-resolved emission spectroscopy to follow the structural changes of HAN due to the hydrophobicity and confinement effect of these nanocavities. Upon encapsulation, the fluorescence intensity of the 1:1 inclusion complex in both cavities increases, and the emission lifetimes become longer. For the DM-beta-CD complexes, we obtained 430 and 920 ps, whereas for the HSA complexes we obtained 630 ps and 2 ns. Picosecond anisotropy measurements show strong confinement due to protein docking. The rotational time for the CD complex is 660 ps, whereas for the protein complex we find 6 ns. The process of energy transfer from the excited triptophan 214 (Trp214) of HSA to the trapped HAN occurs with high efficiency (71%), and the calculated distance between both chromophores is 17 A. We believe that the results are important for a better understanding of the processes occurring in inclusion complexes such as those in nanopharmacodynamics.     

Compound I in heme thiolate enzymes: a comparative QM/MM study

This study directly compares the active species of heme enzymes, so-called Compound I (Cpd I), across the heme-thiolate enzyme family. Thus, sixty-four different Cpd I structures are calculated by hybrid quantum mechanical/molecular mechanical (QM/MM) methods using four different cysteine-ligated heme enzymes (P450(cam), the mutant P450(cam)-L358P, CPO and NOS) with varying QM region sizes in two multiplicities each. The overall result is that these Cpd I species are similar to each other with regard to many characteristic features. Hence, using the more stable CPO Cpd I as a model for P450 Cpd I in experiments should be a reasonable approach. However, systematic differences were also observed, and it is shown that NOS stands out in most comparisons. By analyzing the electrical field generated by the enzyme on the QM region, one can see that (a) the protein exerts a large influence and modifies all the Cpd I species compared with the gas-phase situation and (b) in NOS this field is approximately planar to the heme plane, whereas it is approximately perpendicular in the other enzymes, explaining the deviating results on NOS. The calculations on the P450(cam) mutant L358P show that the effects of removing the hydrogen bond between the heme sulfur and L358 are small at the Cpd I stage. Finally, Mossbauer parameters are calculated for the different Cpd I species, enabling future comparisons with experiments. These results are discussed in the broader context of recent findings of Cpd I species that exhibit large variations in the electronic structure due to the presence of the substrate.     

Oxidation of Ascorbate by Ni(III) Complexes with Tetraaza-macrocyclic Ligands in Neutral Aqueous Solutions. A Pulse-Radiolysis Study

Abstract

The mechanisms and kinetics of oxidation of ascorbate, AH^?, by Ni(III)Lⁱ _aq and by LⁱNi(III) (HPO₄)₂ ^? complexes (L¹ = meso-(5,12)-7,7,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane; L² = 1,8-dimethyl-1,3,6,8,10,13-hexaazacyclotetradecane) in neutral aqueous solutions have been investigated.

The oxidation of ascorbate by the LⁱNi(III) (HPO₄)₂ ^? and Ni(III)L¹ _aq proceeds via two consecutive reactions well separated in time. The products of the first reaction are the A^.? radical anion and the corresponding Ni(II) complex. The oxidations by the LⁱNi(III)(HPO₄)₂ ^? complexes proceed via the outer sphere mechanism, whereas the detailed mechanism of reaction of Ni(III)L¹ _aq cannot be determined. The rate of reaction decreases with the increase in the concentration of phosphate, thus indicating that LⁱNi(III)(HPO₄)(H₂O)⁺ and LⁱNi(III)OH²⁺ are stronger oxidizing agents than LⁱNi(III)(HPO₄)^? ₂.

The oxidation of ascorbate by Ni(III)L² _aq proceeds via three consecutive reactions which are well separated in time. Thus the results clearly point out that this process occurs via the inner sphere mechanism. The first transient observed is tentatively identified as L²(H₂O)Ni(II)(A^.?)²⁺, i.e., an unexpected complex of the ascorbate anion radical. Also in this process the last transient observed is the A^.? anion radical. The stabilization of the ascorbyl radical in a transient complex might be of biological significance.     

Structure of microemulsions with gemini surfactant studied by solvatochromic probe and diffusion NMR

The structure of microemulsions prepared by the anionic gemini surfactant didodecyl diphenyl ether disulfonate (C12-DADS) was investigated by a solvatochromic probe and nuclear magnetic resonance (NMR) diffusion measurements. The NMR measurements indicate the presence of bicontinuous and oil-in-water microemulsions depending on microemulsion composition. The absorbance spectra of the solvatochromic probe, Nile red, indicate the solubilization of the probe in different sites, in agreement with the NMR findings. It was also found that the microemulsions were capable of dissolving the hydrophobic probe, Nile red, up to four times better than expected if it were simply dissolved in the toluene phase.     

Using model complexes to augment and advance metalloproteinase inhibitor design

The tetrahedral zinc complex [(Tp(Ph,Me))ZnOH] (Tp(Ph,Me) = hydrotris(3,5-phenylmethylpyrazolyl)borate) was combined with 2-thenylmercaptan, ethyl 4,4,4-trifluoroacetoacetate, salicylic acid, salicylamide, thiosalicylic acid, thiosalicylamide, methyl salicylate, methyl thiosalicyliate, and 2-hydroxyacetophenone to form the corresponding [(Tp(Ph,Me))Zn(ZBG)] complexes (ZBG = zinc-binding group). X-ray crystal structures of these complexes were obtained to determine the mode of binding for each ZBG, several of which had been previously studied with SAR by NMR (structure-activity relationship by nuclear magnetic resonance) as potential ligands for use in matrix metalloproteinase inhibitors. The [(Tp(Ph,Me))Zn(ZBG)] complexes show that hydrogen bonding and donor atom acidity have a pronounced effect on the mode of binding for this series of ligands. The results of these studies give valuable insight into how ligand protonation state and intramolecular hydrogen bonds can influence the coordination mode of metal-binding proteinase inhibitors. The findings here suggest that model-based approaches can be used to augment drug discovery methods applied to metalloproteins and can aid second-generation drug design.     

A multi-shear perfusion bioreactor for investigating shear stress effects in endothelial cell constructs

Tissue engineering research is increasingly relying on the use of advanced cultivation technologies that provide rigorously-controlled cell microenvironments. Herein, we describe the features of a micro-fabricated Multi-Shear Perfusion Bioreactor (MSPB) designed to deliver up to six different levels of physiologically-relevant shear stresses (1-13 dyne cm(-2)) to six cell constructs simultaneously, during a single run. To attain a homogeneous fluid flow within each construct, flow-distributing nets photo-etched with a set of openings for fluid flow were placed up- and down-stream from each construct. Human umbilical vein endothelial cells (HUVECs) seeded in alginate scaffolds within the MSPB and subjected to three different levels of shear stress for 24 h, responded accordingly by expressing three different levels of the membranal marker Intercellular Adhesion Molecule 1 (ICAM-1) and the phosphorylated endothelial nitric oxide synthetase (eNOS). A longer period of cultivation, 17 d, under two different levels of shear stress resulted in different lengths of cell sprouts within the constructs. Collectively, the HUVEC behaviour within the different constructs confirms the feasibility of using the MSPB system for simultaneously imposing different shear stress levels, and for validating the flow regime in the bioreactor vessel as assessed by the computational fluid dynamic (CFD) model.     

The effect of alcohol structures on the interaction mode with the hexameric capsule of resorcin[4]arene

After more than a century of research on resorcin[4]arenes (1) it is clear that such systems form spontaneously [1(6)(H(2)O)(8)]-type hexameric capsules in wet, non-polar, organic solvents. However, the interactions of these hexameric capsules with alcohols are far from being solved. Here we provide the results of an extensive study on the interaction of different alcohols with the hexameric capsules of resorcin[4]arene 1a by focusing on the exchange of magnetization manifested in diffusion NMR measurements of such capsular systems. We found that some alcohols such as 2-octyl-1-dodecanol and 1-octadecanol do not interact with the hexamers of 1a, whereas other alcohols such as 3-ethyl-3-pentanol, 2-ethyl-1-butanol and more act as simple guests and are simply encapsulated in the hexamers. Others alcohols such as 3-pentanol, 2-methyl-1-butanol and others, are part of the hexameric structure where they can exchange magnetization with alcohols in the bulk. The bulkier alcohols, due to an increase of the chain length or in branching, have a higher tendency to be encapsulated rather than being part of the hexameric capsule superstructure. This study demonstrate the unique information that diffusion NMR spectroscopy can provide on supramolecular systems in solution and on the precaution that should be exercised when analyzing diffusion NMR data of such dynamic supramolecular capsules.     

Investigation of self-immolative linkers in the design of hydrogen peroxide activated metalloprotein inhibitors

A series of self-immolative boronic ester protected methyl salicylates and metal-binding groups with various linking strategies have been investigated for their use in the design of matrix metalloproteinase proinhibitors.