Hydroxylation of the silica in microfabricated thin layer chromatography plates as probed by time‐of‐flight secondary ion mass spectrometry and diffuse reflectance infrared Fourier transform spectroscopy

Microfabricated silica thin layer chromatography (TLC) plates have previously been prepared on patterned carbon nanotube forests. The high temperatures used in their fabrication reduce the number of hydroxyl groups on their surfaces. Fortunately, silica can be rehydroxylated. In diffuse reflectance infrared Fourier transform spectroscopy (DRIFT), a silanol peak below 3740 cm^?1 indicates a well‐hydroxylated silica surface that is fit for chromatography. Hydroxylations of our materials with HF are so effective that it is not possible to discern the position of this peak. In contrast, this signal is discernable when the plates are treated with NH₄OH. To find a more convenient method for studying the surfaces of TLC plates, time‐of‐flight secondary ion mass spectroscopy (ToF‐SIMS) was considered. ToF‐SIMS is advantageous because multiple microfabricated TLC plates must be scraped to obtain enough silica for one DRIFT analysis, while static SIMS can be performed on very small regions (500 × 500 µm² or less) of individual plates. Ratios of the SiOH⁺ and Si⁺ ToF‐SIMS signals for microfabricated TLC plates correlated well with ~3740 cm^?1 silanol peaks from DRIFT. Thus, SIMS allows direct analysis of all of our treated and untreated plates, including those hydroxylated with HF. The best hydroxylation condition for HF, which was better than any studied for NH₄OH, was around 150 ppm at room temperature. The best hydroxylation condition for NH₄OH was 50 °C for 72 h. ToF‐SIMS versus DRIFT results of commercial TLC plates were also obtained and evaluated. Copyright © 2014 John Wiley & Sons, Ltd.     

Explicit Solutions of Quadratic FBSDEs Arising From Quadratic Term Structure Models

We provide explicit solutions of certain forward-backward stochastic differential equations (FBSDEs) with quadratic growth. These particular FBSDEs are associated with quadratic term structure models of interest rates and characterize the zero-coupon bond price. The results of this paper are naturally related to similar results on affine term structure models of Hyndman (Math. Financ. Econ. 2(2):107–128, 2009) due to the relationship between quadratic functionals of Gaussian processes and linear functionals of affine processes. Similar to the affine case a sufficient condition for the explicit solutions to hold is the solvability in a fixed interval of Riccati-type ordinary differential equations. However, in contrast to the affine case, these Riccati equations are easily associated with those occurring in linear-quadratic control problems. We also consider quadratic models for a risky asset price and characterize the futures price and forward price of the asset in terms of similar FBSDEs. An example is considered, using an approach based on stochastic flows that is related to the FBSDE approach, to further emphasize the parallels between the affine and quadratic models. An appendix discusses solvability and explicit solutions of the Riccati equations.     

Aqueous-phase deactivation and intramolecular [2 + 2 + 2] cycloaddition of oxanorbornadiene esters

Both inter- and intramolecular degradation pathways were identified for the aqueous phase deactivation of oxanorbornadiene (OND) electrophiles, and propargylic OND esters were found to undergo facile intramolecular [2 + 2 + 2] homo-Diels-Alder cycloaddition in polar media.     

Effective Rheology of Two-Phase Flow in Three-Dimensional Porous Media: Experiment and Simulation

We present an experimental and numerical study of immiscible two-phase flow of Newtonian fluids in three-dimensional (3D) porous media to find the relationship between the volumetric flow rate (Q) and the total pressure difference (\(\Delta P\)) in the steady state. We show that in the regime where capillary forces compete with the viscous forces, the distribution of capillary barriers at the interfaces effectively creates a yield threshold (\(P_t\)), making the fluids reminiscent of a Bingham viscoplastic fluid in the porous medium. In this regime, Q depends quadratically on an excess pressure drop (\(\Delta P-P_t\)). While increasing the flow rate, there is a transition, beyond which the overall flow is Newtonian and the relationship is linear. In our experiments, we build a model porous medium using a column of glass beads transporting two fluids, deionized water and air. For the numerical study, reconstructed 3D pore networks from real core samples are considered and the transport of wetting and non-wetting fluids through the network is modeled by tracking the fluid interfaces with time. We find agreement between our numerical and experimental results. Our results match with the mean-field results reported earlier.     

“Anti-electrostatic” halogen bonding in solution

Halogen-bonded (XB) complexes between halide anions and a cyclopropenylium-based anionic XB donor were characterized in solution for the first time. Spontaneous formation of such complexes confirms that halogen bonding is sufficiently strong to overcome electrostatic repulsion between two anions. The formation constants of such “anti-electrostatic” associations are comparable to those formed by halides with neutral halogenated electrophiles. However, while the latter usually show charge-transfer absorption bands, the UV-Vis spectra of the anion–anion complexes examined herein are determined by the electronic excitations within the XB donor. The identification of XB anion–anion complexes substantially extends the range of the feasible XB systems, and it provides vital information for the discussion of the nature of this interaction.

Spontaneous formation of “anti-electrostatic” complexes in solution demonstrates that halogen bonding can be sufficiently strong to overcome anion–anion repulsion when the latter is attenuated by the polar medium.

Halogen bonding (XB) is an attractive interaction between a Lewis base (LB) and a halogenated compound, exhibiting an electrophilic region on the halogen atom.¹ It is most commonly related to electrostatic interaction between an electron-rich species (XB acceptor) and an area of positive electrostatic potential (σ-holes) on the surface of the halogen substituent in the electrophilic molecule (XB donor).² Provided that mutual polarization of the interacting species is taken into account, the σ-hole model explains geometric features and the variation of stabilities of XB associations, especially in the series of relatively weak complexes.³ Based on the definition of halogen bonding and its electrostatic interpretation, this interaction is expected to involve either cationic or neutral XB donors. Electrostatic interaction of anionic halogenated species with electron-rich XB acceptors, however, seems to be repulsive, especially if the latter are also anionic. Yet, computational analyses predicted that halogen bonding between ions of like charges, called “anti-electrostatic” halogen bonding (AEXB),⁴ can possibly be formed^5–12 and the first examples of AEXB complexes formed by different anions, i.e. halide anions and the anionic iodinated bis(dicyanomethylene)cyclopropanide derivatives 1 (see Scheme 1) or the anionic tetraiodo-p-benzoquinone radical, were characterized recently in the solid state.^13,14 The identification of such complexes substantially extends the range of feasible XB systems, and it provides vital information for the discussion of the nature of this interaction. Computational results, however, significantly depend on the used methods and applied media (gas phase vs. polar environment and solvation models) and the solid state arrangements of the XB species might be affected by crystal forces and/or counterions. Unambiguous confirmation of the stability of the halogen-bonded anion–anion complexes and verification of their thermodynamic characteristics thus requires experimental characterization of the spontaneous formation of such associations in solution. Still, while the solution-phase complexes formed by hydrogen bonding between two anionic species were reported previously,^15–17 there is currently no example of “anti-electrostatic” XB in solution.Open in a separate windowScheme 1Structures of the XB donor 1 and its hydrogen-substituted analogue 2.To examine halogen bonding between two anions in solution, we turn to the interaction between halides and 1,2-bis(dicyanomethylene)-3-iodo-cyclopropanide 1 (Scheme 1).^‡ Even though this compound features a cationic cyclopropenylium core, it is overall anionic, and calculations have demonstrated that its electrostatic potential is universally negative across its entire surface.¹³ The solution of 1 (with tris(dimethylamino)cyclopropenium (TDA) as counterion) in acetonitrile is characterized by an absorption band at 288 nm with ε = 2.3 × 10⁴ M⁻¹ cm⁻¹ (Fig. 1). As LB, we first applied iodide anions taken as a salt with n-tetrabutylammonium counter-ion, Bu₄NI. This salt does not show absorption bands above 290 nm, but its addition to a solution of 1 led to a rise of absorption in the 290–350 nm range (Fig. 1). Subtraction of the absorption of the individual components from that of their mixture produced a differential spectrum which shows a maximum at about 301 nm (insert in Fig. 1). At constant concentration of the XB donor (1) and constant ionic strength, the intensity of the absorption in the range of 280–300 nm (and hence differential absorbance, ΔAbs) rises with increasing iodide concentration (Fig. S1 in the ESI^†). This suggests that the interaction of iodide with 1 results in the formation of the [1, I⁻]-complex which shows a higher absorptivity in this spectral range (eqn (1)):1 + X⁻ ⇌ [1, X⁻]1Open in a separate windowFig. 1Spectra of acetonitrile solutions with constant concentration of 1 (0.60 mM) and various concentrations of Bu₄NI (6.0, 13, 32, 49, 75, 115 and 250 mM, solid lines from the bottom to the top). The dashed lines show spectra of the individual solutions 1 (c = 0.60 mM, red line) and Bu₄NI (c = 250 mM, blue line). The ionic strength was maintained using Bu₄NPF₆. Insert: Differential spectra of the solutions obtained by subtraction of the absorption of the individual components from the spectra of their corresponding mixtures.To clarify the mode of interaction between 1 and iodide in the complex, we also performed analogous measurements with the hydrogen-substituted compound 2 (see Scheme 1). The addition of iodide to a solution of 2 in acetonitrile did not increase the absorption in the 280–300 nm spectral range. Instead, some decrease of the absorption band intensity of 2 with the increase of concentration of I⁻ anions was observed (Fig. S2 in the ESI^†). Such changes are related to a blue shift of this band resulting from the hydrogen bonding between 2 and iodide (formation of hydrogen-bonded [2, I⁻] complex is corroborated by the observation of the small shift of the NMR signal of the proton of 2 to the higher ppm values in the presence of I⁻ anions, see Fig. S3 in the ESI^†).^§ Furthermore, since H-compound 2 should be at least as suitable as XB donor 1 to form anion–π complexes with the halide, this finding (as well as solid-state and computational data^¶) rules out that any increase in absorption in this region observed with the I-compound 1 may be due to this alternative interaction.Likewise, the addition of NBu₄I to a solution of TDA cations taken as a salt with Cl⁻ anions did not result in an increase in the relevant region. Hence, we could also rule out anion–π interactions with the TDA counter-ions as source of the observed changes, which is in line with previous reports on the electron-rich nature of TDA.¹⁸All these observations (supported by the computational analysis, vide infra) indicate that the [1, I⁻] complex (eqn (1)) is formed via halogen bonding of I⁻ with iodine substituents in 1. The changes in the intensities of the differential absorption ΔAbs as a function of the iodide concentration (with constant concentration of XB donor (1) as well as constant ionic strength) are well-modelled by the 1 : 1 binding isotherm (Fig. S1 in the ESI^†). The fit of the absorption data produced a formation constant of K = 15 M⁻¹ for the [1, I⁻] complex (Table 1).^|| The overlap with the absorption of the individual XB donor hindered the accurate evaluation of the position and intensity of the absorption band of the corresponding complex which is formed upon LB-addition to 1. As such, the values of Δλ_max shown in Table 1 represent a wavelength of the largest difference in the absorptivity of the [1, I⁻] complex and individual anion 1, and Δε reflects the difference of their absorptivity at this point (see the ESI^† for the details of calculations).Equilibrium constants and spectral characteristics of the complexes of 1 with halide anions X⁻

High-Energy Collision-Induced Dissociation by MALDI TOF/TOF Causes Charge-Remote Fragmentation of Steroid Sulfates

A method for structural elucidation of biomolecules dating to the 1980s utilized high-energy collisions (~10 keV, laboratory frame) that induced charge-remote fragmentations (CRF), a class of fragmentations particularly informative for lipids, steroids, surfactants, and peptides. Unfortunately, the capability for high-energy activation has largely disappeared with the demise of magnetic sector instruments. With the latest designs of tandem time-of-flight mass spectrometers (TOF/TOF), however, this capability is now being restored to coincide with the renewed interest in metabolites and lipids, including steroid-sulfates and other steroid metabolites. For these metabolites, structure determinations are required at concentration levels below that appropriate for NMR. To meet this need, we explored CRF with TOF/TOF mass spectrometry for two groups of steroid sulfates, 3-sulfates and 21-sulfates. We demonstrated that the current generation of MALDI TOF/TOF instruments can generate charge-remote fragmentations for these materials. The resulting collision-induced dissociation (CID) spectra are useful for positional isomer differentiation and very often allow the complete structure determination of the steroid. We also propose a new nomenclature that directly indicates the cleavage sites on the steroid ring with carbon numbers.

Intracellular pH mapping with SNARF-1 and confocal microscopy. I: A quantitative technique for living tissue and isolated cells

A fluorescent pH indicator in conjunction with confocal microscopy, was used to map intracellular pH in a variety of cells and tissues with high spatial resolution. The new pH-sensitive fluorescent probe SNARF-1 was excited with the 488 nm band of the argon ion laser of a Bio-Rad MRC-500 confocal microscope. Ratio images were created with pixel-by-pixel division, with the intensity of these images representing a function of pH, that is independent of dye concentration, photobleaching or path length. Cell cultures of rat aortic smooth muscle were loaded with 20 μм SNARF-1/AM for 20 min at 37°C. Intracellular pH levels were calibrated in situ by treatment of each cell with nigericin (20 μм) in solutions of known pH. The cytosolic pH of the majority of cells was uniform, however, pH gradients were evident between the cytosol and nuclear regions, indicating the ability of this technique to map intracellular and intraorganelle pH. Rat C6 glioblastoma spheroids were cultured then loaded with SNARF-1/AM at 10°C for 90 min. The pH values were calibrated in vitro, using SNARF-1 acid in buffered solutions of known pH. Ratio images of the bisected spheroids showed a marked gradient in pH from the outer cells compared with central necrotic cells. The degree of involvement of acidification in muscle fatigue was investigated by simultaneously determining force generation and intracellular pH in individual fibres of an intact rat muscle. The investigation was performed during a stimulation protocol which induced significant fatigue in the force response of the muscle. The fatigue protocol induced little change in cytosolic pH in the fibres. We show that the use of SNARF-1, in conjunction with confocal microscopy is a powerful technique for accurately mapping pH within single cells, multicellular tissues and intact organs, as well as for accurately recording dynamic changes in pH.     

Laser photolysis of C2H2 and CF3C2H at 193 nm: Production of C2(d3Πg and CH(A2Δ) and their quenching by Xe

The 193 nm laser photodissociation of CH₂H₂ and CF₃C₂H has been studied. With the laser beam focused, C₂(d³Π_g) and CH(A²Δ) radicals were formed by multiphoton processes in both C₂H₂ and CF₃C₂H; however, the one-photon process forming C₂H is still predominant in CF₃C₂H photolysis. The production of C₂(d³Π_g) and CH(A²Δ) emissions is prompt,and the emission intensities show similar (less than quadratic) dependence on laser power whether the radicals are produced from C₂H₂ or CF₃C₂H. In addition, the vibrational distribution of the Swan system is nearly the same in CF₃C₂H as in C₂H₂. The results indicate that the overall photolytic processes are similar in two molecules. Both the C₂(d³Π_g) and CH(A²Δ) emissions are quenched by Xe with rate constants of 4.8×10^?11 and 1.8×10^?11 cm³ molecule^?1 s^?1, respectively.     

Recombination centers in phosphorous doped hydrogenated amorphous silicon

Optical absorption below the mobility gap of a-SiH_x:P films is derived from photoconductivity measurements and interpreted in terms of optical transitions from occupied localized states in the exponential valence band tail and dangling bond states 0.8 eV above the valence band edge to unoccupied free electron conduction band states. Collection efficiency measurements of Schottky barrier structures indicate that P doping introduces centers with large capture cross-section for holes.