Bigger data,collaborative tools and the future of predictive drug discovery

Over the past decade we have seen a growth in the provision of chemistry data and cheminformatics tools as either free websites or software as a service commercial offerings. These have transformed how we find molecule-related data and use such tools in our research. There have also been efforts to improve collaboration between researchers either openly or through secure transactions using commercial tools. A major challenge in the future will be how such databases and software approaches handle larger amounts of data as it accumulates from high throughput screening and enables the user to draw insights, enable predictions and move projects forward. We now discuss how information from some drug discovery datasets can be made more accessible and how privacy of data should not overwhelm the desire to share it at an appropriate time with collaborators. We also discuss additional software tools that could be made available and provide our thoughts on the future of predictive drug discovery in this age of big data. We use some examples from our own research on neglected diseases, collaborations, mobile apps and algorithm development to illustrate these ideas.     

Nature of the quantum critical point as disclosed by extraordinary behavior of magnetotransport and the lorentz number in the heavy-fermion metal YbRh2Si2

Physicists are engaged in vigorous debate on the nature of the quantum critical points (QCP) governing the low-temperature properties of heavy-fermion metals. Recent experimental observations of the much-studied compound YbRh₂Si₂ in the regime of vanishing temperature incisively probe the nature of its magnetic-field-tuned QCP. The jumps revealed both in the residual resistivity ??₀ and the Hall resistivity R _H, along with violation of the Wiedemann-Franz law, provide vital clues to the origin of such non-Fermi-liquid behavior. The empirical facts point unambiguously to association of the observed QCP with a fermion-condensation phase transition. Based on this insight, the resistivities ??₀ and R _H are predicted to show jumps at the crossing of the QCP produced by application of a magnetic field, with attendant violation of the Wiedemann-Franz law. It is further demonstrated that experimentally identifiable multiple energy scales are related to the scaling behavior of the effective mass of the quasiparticles responsible for the low-temperature properties of such heavy-fermion metals.     

X-ray absorption signatures of hydrogen-bond structure in water–alcohol solutions

Despite fundamental importance, the experimental characterization of the hydrogen bond network, particularly in multicomponent protic solutions, remains a challenge. Although recent work has experimentally validated that the oxygen K-edge X-ray absorption spectra is sensitive to local hydrogen bond patterns in pure water and aqueous alcohol solutions, the generality of this observation is unknown—as is the sensitivity to the electronic structure of the alcohol cosolvent. In this work, we investigate the electronic structure of water solvated alcohol model geometries using energy specific time-dependent density functional theory to calculate oxygen K-edge X-ray excitations. We find that the geometry of dangling hydrogen bonds in pure water is the main contributor to the pre-edge feature seen in the X-ray absorption spectra, agreeing with previous experimental and theoretical work. We then extend this result to solvated alcohol systems and observe a similar phenomenon, yet importantly, the increase of electron donation from alkyl chains to the alcohol OH group directly correlates to the strength of the core excitation on the dangling hydrogen bond model geometry. This trend arises from a stronger transition dipole moment due to electron localization on the OH group.     

Study of Cholesteric Textures in Phase Change Devices by Laser Light Diffraction

Photographic-recording and photomultiplier-recording laser light diffractometers have been constructed and used to study the cholesteric textures in phase change devices as a function of applied voltage and device parameters. The focal conic texture formed with increasing voltage gives diffraction peaks corresponding to 2π rotations of the director, whereas the texture formed by slow nucleation with decreasing voltage also gives “superlattice” lines corresponding to a 4π repeat, due to the different local structures of the textures combined possibly with tilting of the director. The repeat distances obtained by indexing the diffraction patterns agree well with microscopical and infra-red reflectance observations. Laser light diffraction appears to be a powerful technique for quantitative study of the non-uniform unwinding and re-forming of cholesteric twist in an electric field.     

Top-down synthesis of polyoxometalate-like sub-nanometer molybdenum-oxo clusters as high-performance electrocatalysts

The top-down fabrication of catalytically active molecular metal oxide anions, or polyoxometalates, is virtually unexplored, although these materials offer unique possibilities, for catalysis, energy conversion and storage. Here, we report a novel top-down route, which enables the scalable synthesis and deposition of sub-nanometer molybdenum-oxo clusters on electrically conductive mesoporous carbon. The new approach uses a unique redox-cycling process to convert crystalline Mo^IVO₂ particles into sub-nanometer molecular molybdenum-oxo clusters with a nuclearity of ∼1–20. The resulting molybdenum-oxo cluster/carbon composite shows outstanding, stable electrocatalytic performance for the oxygen reduction reaction with catalyst characteristics comparable to those of commercial Pt/C. This new material design could give access to a new class of highly reactive polyoxometalate-like metal oxo clusters as high-performance, earth abundant (electro-)catalysts.

The top-down synthesis and deposition of polyoxometalate-like clusters on porous carbon is reported together with the high electrocatalytic oxygen reduction reactivity of the composite.     

Evidence for Non-Innocence of a β-Diketonate Ligand

β-Diketonates, such as acetylacetonate, are amongst the most common bidentate ligands towards elements across the entire periodic table and are considered wholly redox-inactive in their complexes. Herein we show that complexation of 1,1,1,5,5,5-hexafluoroacetylacetonate (hfac⁻) to Cr^II spontaneously affords Cr^III and a reduced β-diketonate radical ligand scaffold, as evidenced by crystallographic analysis, magnetic measurements, optical spectroscopy, reactivity studies, and DFT calculations. The possibility of harnessing β-diketonates as electron reservoirs opens up possibilities for new metal–ligand concerted reactivity in the ubiquitous β-diketonate coordination chemistry.     

A Brownian Particle in a Microscopic Periodic Potential

We study a model for a massive test particle in a microscopic periodic potential and interacting with a reservoir of light particles. In the regime considered, the fluctuations in the test particle’s momentum resulting from collisions typically outweigh the shifts in momentum generated by the periodic force, so the force is effectively a perturbative contribution. The mathematical starting point is an idealized reduced dynamics for the test particle given by a linear Boltzmann equation. In the limit that the mass ratio of a single reservoir particle to the test particle tends to zero, we show that there is convergence to the Ornstein–Uhlenbeck process under the standard normalizations for the test particle variables. Our analysis is primarily directed towards bounding the perturbative effect of the periodic potential on the particle’s momentum.