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111.
112.
Sprous DG Lowis DR Leonard JM Heritage T Burkett SN Baker DS Clark RD 《Journal of combinatorial chemistry》2004,6(4):530-539
Products from combinatorial libraries generally share a common core structure that can be exploited to improve the efficiency of virtual high-throughput screening (vHTS). In general, it is more efficient to find a method that scales with the total number of reagents (Sigma growth) rather with the number of products (Pi growth). The OptiDock methodology described herein entails selecting a diverse but representative subset of compounds that span the structural space encompassed by the full library. These compounds are docked individually using the FlexX program (Rarey, M.; Kramer, B.; Lengauer, T.; Klebe, G. J. Mol. Biol. 1995, 251, 470-489) to define distinct docking modes in terms of reference placements for combinatorial core atoms. Thereafter, substituents in R-cores (consisting of the core structure substituted at a single variation site) are docked, keeping the core atoms fixed at the coordinates dictated by each reference placement. Interaction energies are calculated for each docked R-core with respect to the target protein, and energies for whole compounds are calculated by finding the reference core placement for which the sum of corresponding R-core energies is most negative. The use of diverse whole compounds to define binding modes is a key advantage of the protocol over other combinatorial docking programs. As a result, OptiDock returns better-scoring conformers than does serially applied FlexX. OptiDock is also better able to find a viable docked pose for each library member than are other combinatorial approaches. 相似文献
113.
S. E. Glover R. H. Filby S. B. Clark 《Journal of Radioanalytical and Nuclear Chemistry》1998,234(1-2):201-208
The determination of isotopic thorium by alpha-spectrometric methods is a routine practice for bioassay and environmental
measurement programs. Alpha-spectrometry has excellent detection limits (by mass) for all isotopes of thorium except232Th due to its extremely long half-life. This paper reports a pre-concentration neutron activation analysis (PCNAA) method
for232Th that may be performed following alpha-spectrometry if a suitable source preparation material is utilized. Human tissues
and other samples were spiked with229Th and the thorium was isolated from the sample using ion exchange chromatography. The thorium was then electrodeposited from
a sulfate-based medium onto a vanadium planchet, counted by alpha-spectrometry, and then analyzed for232Th by neutron activation analysis. The radiochemical yield was determined from the alpha-spectrometric method. Detection limits
for232Th by this PCNAA method are approximately 50 times lower than achieved by alphaspectrometry. 相似文献
114.
The synthesis and structural characterization of a rare example of a uranyl complex possessing three equatorial ligands, [M(THF)2][UO2(N(SiMe3)2)3] (3a, M = Na; 3b, M = K), are described. The sodium salt 3a is prepared by protonolysis of [Na(THF)2]2[UO2(N(SiMe3)2)4], whereas the potassium salt 3b is obtained via a metathesis reaction of uranyl chloride UO2Cl2(THF)2 (4) with 3 equiv of K[N(SiMe3)2]. A single-crystal X-ray diffraction study of 3a revealed a trigonal-bipyramidal geometry about uranium, formed by two axial oxo and three equatorial amido ligands, with average U=O and U-N bond distances of 1.796(5) and 2.310(4) A, respectively. One of the oxo ligands is also coordinated to the sodium counterion. 1H NMR spectroscopic studies indicate that THF adds reversibly as a ligand to 3 to expand the trigonal bipyramidal geometry. The degree to which the coordination sphere in 3 is electronically satisfied with only three amido donors is suggested by (1) the reversible THF coordination, (2) a modest elongation in the bond distances for a five-coordinate U(VI) complex, and (3) the basicity of the oxo ligands as evidenced in the contact to Na. The vibrational spectra of the series of uranyl amido complexes [UO2(N(SiMe3)2)n]2-n (n = 2-4) are compared, to evaluate the effects on the axial U=O bonding as a function of increased electron density donated from the equatorial region. Raman spectroscopic measurements of the nu 1 symmetric O=U=O stretch show progressive axial bond weakening as the number of amido donors is increased. Crystal data for [Na(THF)2][UO2(N(SiMe3)2)3]: orthorhombic space group Pna2(1), a = 22.945(1) A, b = 15.2830(7) A, c = 12.6787(6) A, z = 4, R1 = 0.0309, wR2 = 0.0524. 相似文献
115.
Summary Salts of the anions [SnX5]–, [SnX4Cl, [SnX3Cl2]–, [SnX3]–, [PbX3]–, [SbX4]–, [SbX3Cl]–, [SbX2Cl2]–, [BiX4]–, [AuCl2]–, [AuX2]–, [AuXCl]–, [AuX4]–, [Au2X6]2– and [PtX4]2–, where X– = C6F5S–, have been isolated and characterised. The neutral SbX3 and BiX3 species, have also been isolated and shown to be pyramidal monomers (19F.n.m.r., i.r., and Raman spectral evidence). Various physical properties of the complexes prepared, as well as their stereochemistries (where these could be ascertained), are similar to those of the known corresponding halogeno compounds of these elements. These results further demonstrate the pseudo-halide nature of the pentafluorothiophenoxide ion.Author to whom all correspondence should be directed at: Laboratoire de Chimie de Coordination, Uniyersité Louis Pasteur, 67008 Strasbourg, France. 相似文献
116.
Ravn P Kjaer S Jensen KH Wind T Jensen KB Kristensen P Brosh RM Orren DK Bohr VA Clark BF 《Electrophoresis》2000,21(3):509-516
A procedure was established for selecting phage antibodies (phage-abs) from phage-displayed antibody repertoires by panning against proteins, separated by sodium dodecyl phosphate-polyacrylamide gel electrophoresis (SDS-PAGE) and electroblotted onto nitrocellulose membranes (Western blots). This immobilization strategy is applicable for secondary rounds of panning in selections against semipurified proteins, and directs the selection toward antibodies suitable as immunochemical reagents in Western blots. In model experiments, enrichment factors as high as 1.9x10(5) were obtained in a single round of panning. Furthermore, we demonstrate the application of this approach by selection of phage-abs recognizing the human Werner protein, which is defective in a premature aging syndrome. 相似文献
117.
The capability of the extended forms, of two well established cosolvency models, i.e. the combined nearly ideal binary solvent/Redlich-Kister equation and the modified Wilson model, used to predict the solute solubility in non-aqueous ternary solvent mixtures is presented. These predictions are based on the measured solubilities of anthracene in binary solvent mixtures. As a result the values of average percent deviations were less than 2% for the anthracene solubility in ternary mixtures. This work was also extended to other cosolvency models, ie. the extended Hildebrand solubility approach and the mixture response surface method, which are also commonly used for correlating solubility data in ternary solvents. The accuracy of the models is compared with each other and also with a published solubility model for ternary mixtures. The results illustrate that all models produced comparable accuracy. 相似文献
118.
Clark Robinson 《Communications in Mathematical Physics》1983,90(3):433-459
This paper considers one parameter families of diffeomorphisms {F t } in two dimensions which have a curve of dissipative saddle periodic pointsP t , i.e.F t n (P t )=P t and |detDF t n (P t )|<1. The family is also assumed to create new homoclinic intersections of the stable and unstable manifolds ofP t as the parameter varies throught 0. Gavirlov and Silnikov proved that if the new homoclinic intersections are created nondegenerately att 0, then there is an infinite cascade of periodic sinks, i.e. there are parameter valuest n accumulating att 0 for which there is a sink of periodn [GS2, Sect. 4]. We show that this result is true for real analytic diffeomorphisms even if the homoclinic intersection is created degenerately. We give computer evidence to show that this latter result is probably applicable to the Hénon map forA near 1.392 andB equal ?0.3. Newhouse proved a related result which showed the existence of infinitely many periodic sinks for a single diffeomorphism which is a perturbation of a diffeomorphism with a nondegenerate homoclinic tangency. We give the main geometric ideas of the proof of this theorem. We also give a variation of a key lemma to show that the result is true for a fixed one parameter family which creates a nondegenerate tangency. Thus under the nondegeneracy assumption, not only is there a cascade of sinks proved by Gavrilov and Silnikov, but also a single parameter valuet* with infinitely many sinks. 相似文献
119.
COMPARATIVE PHOTOCHEMICAL ANALYSIS OF HIGHLY PURIFIED 124 KILODALTON OAT and RYE PHYTOCHROMES in vitro 总被引:3,自引:0,他引:3
J. Clark Lagarias John M. Kelly Karen L. Cyr William O. Smith Jr 《Photochemistry and photobiology》1987,46(1):5-13
Abstract A direct comparison of the photochemical interconversions between red (Pr -) and far-red (Pfr -) absorbing forms of highly-purified 124 kDa oat and rye phytochromes under identical experimental conditions was performed. In two different buffer systems at 5°C, the quantum yields for the Pr to Ptr and Pfr to Pr phototransformations under constant red and far-red illumination, φ r and φfr respectively, were determined to be 0.152-0.154 and 0.060-0.065 for oat preparations and 0.172-0.174 and 0.074-0.078 for rye preparations. These values as well as the wavelength dependence of the photoequilibrium produced under continuous illumination throughout the visible and near-ultraviolet spectrum were based on the absorption spectra of the two phytochrome preparations and revised molar absorption coefficients. The molar absorption coefficients were estimated by quantitative amino acid analysis and shown to be identical for the two monocot phytochromes (i.e. 132 mM −1 cm−1 at the red absorption maximum for the Pr form). Because these measurements were performed under identical experimental conditions, including buffer, temperature, light fluence rate, and instrumentation, the differences observed must reflect structural features inherent to the two different monocotyledonous phytochromes. 相似文献
120.
Robin D. Clark 《Journal of heterocyclic chemistry》1983,20(5):1393-1395
N-substituted 4-(2-morpholinyl)indoles were prepared from 1-(t-butoxycarbonyl)-4-acetylindole (7) which was itself prepared from 4-cyanoindole. Bromination of ketone 7, followed by reaction with amines and subsequent sodium borohydride reduction, gave amino alcohols. These were converted to α-chloro amides that were cyclized to lactams. Lithium aluminum hydride reduction served both to remove the t-BOC protecting group and to reduce the lactams to the 4-(2-morpholinyl) indoles. 相似文献