A lectin-coupled,multiple reaction monitoring based quantitative analysis of human plasma glycoproteins by mass spectrometry

Aberrant protein glycosylation may be closely associated with cancer pathology. To measure the abundance of protein glycoforms with a specific glycan structure in plasma samples, we developed a lectin-coupled multiple reaction monitoring (MRM)-based mass spectrometric method. It was confirmed that the method could provide reproducible results with precision sufficient to distinguish differences in the abundance of protein glycoforms between individuals. Plasma samples prepared from hepatocellular carcinoma (HCC) patients without immuno-depletion of highly abundant plasma proteins were fractionated by use of fucose-specific aleuria aurantia lectin (AAL) immobilized on magnetic beads by use of a biotin–streptavidin conjugate. The lectin-captured fractions were digested by trypsin and profiled by tandem mass spectrometry. From the proteomic profiling data, target glycoproteins were selected and analyzed quantitatively by MRM-based analysis. The reproducibility of MRM-based quantification of the selected target proteins was reliable, with precision (CV; ≤14% for batch-to-batch replicates and ≤19% for replicates over three days) sufficient to distinguish differences in the abundance of AAL-captured glycoforms between individual plasma samples. This lectin-coupled, MRM-based method, measuring only lectin-captured glycoforms of a target protein rather than total target protein, is a tool for monitoring differences between individuals by measuring the abundance of aberrant glycoforms of a target protein related to a disease. This method may be further applied to rapid verification of biomarker candidates involved in aberrant protein glycosylation in human plasma.     

Influence of High-energy electron-beam on photocatalytic activity of TiO2 films on carbon-fiber deposited by atomic layer deposition

High-energy electron-beam with energy of 1 MeV was used for modifying surface structure of TiO₂ thin films on carbon fiber prepared by using atomic layer deposition under atmospheric pressure. TiO₂ nanoparticles (∼20 nm) on carbon fiber underwent structural modification of the surface upon electron-beam treatment, resulting in enhanced photocatalytic activity. In contrast, a thicker film of TiO₂ did not show such changes in surface structure and photocatalytic activity by electron-beam treatment. We demonstrate that electron-beam can be used for modifying surface structure of photocatalysts consisting of nanoparticles for improvement of their activity.     

Genetic association of the EGR2 gene with bipolar disorder in Korea

The early growth response gene 2 (EGR2) is located at chromosome 10q21, one of the susceptibility loci in bipolar disorder (BD). EGR2 is involved in cognitive function, myelination, and signal transduction related to neuregulin-ErbB receptor, Bcl-2 family proteins, and brain-derived neurotrophic factor. This study investigated the genetic association of the EGR2 gene with BD and schizophrenia (SPR) in Korea. In 946 subjects (350 healthy controls, 352 patients with BD, and 244 with SPR), nine single nucleotide polymorphisms (SNPs) in the EGR2 gene region were genotyped. Five SNPs showed nominally significant allelic associations with BD (rs2295814, rs61865882, rs10995315, rs2297488, and rs2297489), and the positive associations of all except rs2297488 remained significant after multiple testing correction. Linkage disequilibrium structure analysis revealed two haplotype blocks. Among the common identified haplotypes (frequency > 5%), 'T-G-A-C-T (block 1)' and 'A-A-G-C (block 2)' haplotypes were over-represented, while 'C-G-G-T-T (block 1)' haplotype was under-represented in BD. In contrast, no significant associations were found with SPR. Although an extended analysis with a larger sample size or independent replication is required, these findings suggest a genetic association of EGR2 with BD. Combined with a plausible biological function of EGR2, the EGR2 gene is a possible susceptibility gene in BD.     

Periodic calculations of excited state properties for solids using a semiempirical approach

The semiempirical SCF MO method MSINDO (modified symmetrically orthogonalized intermediate neglect of differential overlap) [T. Bredow and K. Jug, Electronic Encyclopedia of Computational Chemistry, 2004] is extended to the calculation of excited state properties through implementation of the configuration interaction singles (CIS) approach. MSINDO allows the calculation of periodic systems via the cyclic cluster model (CCM) [T. Bredow et al., J. Comput. Chem., 2001, 22, 89] which is a direct-space approach and therefore can be in principle combined with all molecular quantum-chemical techniques. The CIS equations are solved for a cluster with periodic boundary conditions using the Davidson-Liu iterative block diagonalization approach. As a proof-of-principle, MSINDO-CCM-CIS is applied for the calculation of optical spectra of ZnO and TiO(2), oxygen-defective rutile, and F-centers in NaCl. The calculated spectra are compared to available experimental and theoretical literature data. After re-adjustment of the empirical parameters the quantitative agreement with experiment is satisfactory. The present approximate approach is one of the first examples of a quantum-chemical methodology for solids where excited states are correctly described as n-electron state functions. After careful benchmark testing it will allow calculation of photophysical and photochemical processes relevant to materials science and catalysis.     

PHOTOREACTION OF 8-METHOXYPSORALEN WITH THYMIDINE

Abstract— The photoreaction of 8-methoxypsoralen (8-MOP) with thymidine in solid film state yielded two 4', 5'-monoadducts (a pair of diastereomers) and three 3,4-monoadducts. The stereochemistry of two 4', 5'-monoadducts was found to be cis-syn and trans-syn and one 3,4-monoadduct was cis-anti. In addition to these monoadducts, 3,4-, 4', 5'-biadducts were also formed during the reaction, but the isolation of each isomer of these adducts was not successful; however, the formation of these biadducts was confirmed by UV, IR, TLC and photosplitting experiments.     

Synthesis of isoxazolo[2,3-a]quinoxalines and pyrrolo[1,2-a]quinoxalines by 1,3-dipolar cycloaddition reaction

The isoxazolo[2,3-a]quinoxalines 11a,b and pyrrolo[1,2-a]quinoxalines 12a,b were selectively synthesized from the 2-substituted 6-chloroquinoxaline 4-oxides 10a,b . The pyrrolo[1,2-a]quinoxalines 12a,b were clarified to be produced by the ring transformation of the isoxazolo[2,3-a]quinoxalines 11a,b . The pyrrolo[1,2-a]quinoxalines 14a,b were obtained from both 2,6-dichloroquinoxaline 4-oxide 9 and compounds 12a,b .     

Stimuli sensitive polymers for drug delivery systems

Temperature sensitive and electric field sensitive hydrogels were prepared for use in modulated drug release systems. Crosslinked poly(N-isopropyl-acrylamide) and its networks, modified with hydrophobic components by copolymerization or by interpenetrating polymer networks (IPNs) formation, were utilized as temperature sensitive hydrogels. Indomethacin (a model solute)-release from polymer matrix and permeation through polymer membrane demonstrated “on-off” regulation with temperature fluctuation. This was the result of polymer surface properties rather than bulk swelling, as temperature was changed past the swelling transition temperature range of the polymer. The on-off regulation in an electric field was also obtained with a positively charged solute (Edrophonium chloride) release in distilled-deionized water from a matrix of crosslinked poly(2-acrylamido-2-methylpropanesulfonic acid-co-butyl methacrylate). This was attributed to the ion exchange between Edrophonium ion and protons produced at the anode. The swelling changes produced by local pH or ionic strength changes affected non-charged solute release.     

Syntheses, spectroscopic characteristics and thermolytic rearrangements of bis-[(trimethylgermyl)methyl]platinum(II) and bis-[(trimethylstannyl)methyl]platinum(II) complexes

The preparations and spectroscopic characteristics are reported of a series of (trimethylgermyl)methyl- and (trimethylstannyl)methylplatinum(II) complexes with diene and P-donor ancillary ligands, cis-Pt(CH₂GeMe₃)₂L₂ (L = PPh₃ or PPh₂Me; L₂ = dppe or cod) and cis-Pt(CH₂SnMe₃)₂L₂ (L = PPh₃; L₂ =cod). Thermolysis of toluene solutions of cis-Pt(CH₂GeMe₃)₂(PPh₃)₂ leads to cis-Pt(Me)(CH₂GeMe₂CH₂GeMe₃)(PPh₃)₂ via β-alkyl migration, after (non-rate-limiting) phosphine dissociation. Estimated activation parameters (ΔH_{298 K}^‡ = 126 ± 3 kJ mol⁻¹, ΔS^‡ = + 17 ± 7 J mol⁻¹ K⁻¹ and hence Δ_{298 K}^‡ = 121 ± 5 kJ mol⁻¹) suggest that this system is more migration labile than its silicon analogue, primarily as a result of a lower activation enthalpy. While cis-Pt(CH₂GeMe₃)₂(PPh₂Me)₂ reacts similarly but less readily, Pt(CH₂GeMe₃)₂(dppe)₂ is inert at operable temperatures. Thermolysis of Pt(CH₂GeMe₃)₂(cod) generates 1,1,3,3,-tetramethyldi-1,3-germacyclobutane as the major organogermanium product, while from cis-Pt(CH₂SnMe₃)₂(PPh₃)₂, 1,1,3,3-tetramethyldi-1,3-stannacyclobutane predominates. Mechanistic implications are discussed.     

The ion product of H2O,dissociation constants of H2CO3 and pitzer parameters in the system Na+/H+/OH−/HCO 3 − /CO 3 2- /ClO 4 − /H2O at 25°C

The ion product of water and the dissociation constants of carbonic acid have been determined in 0.1, 1.0, 3.0, and 5.0M NaClO₄ at 25°C. The ion product of water K _w ^' has been evaluated by emf measurements with a combined glass electrode in NaClO₄ solutions containing 0.001–0.1M HCLO₄ or NaOH. The product K _H ^' K _l ^' K ₂ ^' of the Henry constant for CO₂ and the dissociation constants for H₂CO₃ have been determined by titration of carbonate solutions equilibrated with pCO₂ =10^–3.52 atm, and K ₂ ^' has been evaluated by potentiometric titration and by measuring the H⁺ concentration at fixed HCO ₃ ^– and CO ₃ ^2- concentrations. The ion interaction (Pitzer) equations are applied to describe the constants K _w ^' , K ₂ ^' and K _H ^' H ₁ ^' K ₂ ^' as a function of the NaClO₄ concentration. The experimental data are used to evaluate the mixing parameters _{i/ClO 4} and _{i/ClO 4} ^-/Na⁺ fori = OH ^-,HCO ₃ ^- andCO ₃ ^2-     

Microphase separation of PEG-modified urethane acrylate and the swelling behavior of its gels

The viscosity of PEG-modified urethane acrylate (PMUA) showed peculiar behavior in the course of soap-free emulsification. Moreover, the viscosity change with added amounts of water was influenced by the reaction molar ratio of polyethylene glycol (PEG). The rate of increase in viscosity slowed and the ratio of increase in viscosity increased as the reaction molar ratio of PEG increased. This peculiar viscosity behavior was due to the microphase separation between hydrophilic and hydrophobic segments of PMUA, and the orientation of polyoxyethylene groups at O/W interface which influenced droplet size of the soap-free PMUA emulsion. The location of polyoxyethylene groups of this resin at O/W interface was confirmed using the adsorption isotherm measurement of PMUA molecules containing polyoxyethylene groups at water/benzene interface. The microphase separation behavior of PMUA between hydrophilic and hydrophobic segments could apply to the preparation of the PMUA gels containing peculiar structure. PMUA gels were prepared using dioxane (UAG) and the swelling behavior of these gels were compared to that of gels prepared using water (UAHG) in the same medium. In the same medium, the swelling behavior of UAHG gels differed from that of UAG gels because of the difference in the microstructure of gel due to the microphase separation between hydrophilic and hydrophobic segments. This phase separation in the course of gelation in water could be confirmed using contact angle measurement.