Validation of a Reference Gene (BdFIM) for Quantifying Transgene Copy Numbers in Brachypodium distachyon by Real-Time PCR

Brachypodium distachyon has been proposed as a new model system for gramineous plants with a sequenced genome and an efficient transformation system. Many transgenic B. distachyon plants have been generated in recent years. To develop a reliable fast method for detecting transgenic B. distachyon and quantifying its transgene copy numbers, a species-specific reference gene is of great priority to be validated both in qualitative PCR and quantitative real-time PCR detection. In this study, we first proved that the BdFIM (B. distachyon fimbrin-like protein) gene is a suitable reference gene in qualitative PCR and quantitative real-time PCR for B. distachyon. Fourteen different B. distachyon varieties were tested by both qualitative and quantitative PCRs, and identical amplification products of BdFIM were obtained with all of them, while no amplification products were observed with samples from 14 other plant species, suggesting that BdFIM gene was specific to B. distachyon. The results of Southern blot analysis revealed that the BdFIM gene was low copy number in seven tested B. distachyon varieties. In conclusion, the BdFIM gene can be used as a reference gene, since it had species specificity, low heterogeneity, and low copy number among the tested B. distachyon varieties. Furthermore, the copy number of inserted sequences from transgenic B. distachyon obtained by real-time PCR methods and Southern blot confirmed that the BdFIM gene was an applicable reference gene in B. distachyon.     

Phase transformation and crystalline growth of 4 mol% yttria partially stabilized zirconia

The phase transformation and crystalline growth of 4 mol% yttria partially stabilized zirconia (4Y-PSZ) precursor powders have been investigated using the coprecipitation route, using zirconium oxide chloride octahydrate (ZrOCl₂·8H₂O) and yttrium nitrate (Y(NO₃)₃·6H₂O) as the initial materials. Differential thermal analysis (DTA), X-ray diffraction (XRD), transmission electron microscopy (TEM), selected area electron diffraction (SAED), nano beam electron diffraction (NBED), and high resolution TEM (HRTEM) were utilized to characterize the behavior of phase transformation and crystalline growth of the 4Y-PSZ precursor powders after calcined. Tetragonal ZrO₂ crystallization occurred at about 718.2 K. The activation energy of tetragonal ZrO₂ crystallization was 227.0 ± 17.4 kJ/mol, obtained by a non-isothermal method. The growth morphology parameter (n) and growth mechanism index were close to 2.0, showing that tetragonal ZrO₂ had a plate-like morphology. The crystalline size of tetragonal ZrO₂ increased from 7.9 to 27.6 nm when the calcination temperature was increased from 973 to 1,273 K. The activation energies of tetragonal ZrO₂ growth were 14.97 ± 0.33 and 84.46 ± 6.65 kJ/mol when precursor powders after calcined from 723–973 and 973–1,273 K, respectively.     

Chemical Proteomic Profiling of Protein 4′-Phosphopantetheinylation in Mammalian Cells

Protein 4′-phosphopantetheinylation is an essential post-translational modification (PTM) in prokaryotes and eukaryotes. So far, only five protein substrates of this specific PTM have been discovered in mammalian cells. These proteins are known to perform important functions, including fatty acid biosynthesis and folate metabolism, as well as β-alanine activation. To explore existing and new substrates of 4′-phosphopantetheinylation in mammalian proteomes, we designed and synthesized a series of new pantetheine analogue probes, enabling effective metabolic labelling of 4′-phosphopantetheinylated proteins in HepG2 cells. In combination with a quantitative chemical proteomic platform, we enriched and identified all the currently known 4′-phosphopantetheinylated proteins with high confidence, and unambiguously determined their exact sites of modification. More encouragingly, we discovered, using targeted chemical proteomics, a potential 4′-phosphopantetheinylation site in the protein of mitochondrial dehydrogenase/reductase SDR family member 2 (DHRS2).     

An E1-Catalyzed Chemoenzymatic Strategy to Isopeptide-N-Ethylated Deubiquitylase-Resistant Ubiquitin Probes

Triazole-based deubiquitylase (DUB)-resistant ubiquitin (Ub) probes have recently emerged as effective tools for the discovery of Ub chain-specific interactors in proteomic studies, but their structural diversity is limited. A new family of DUB-resistant Ub probes is reported based on isopeptide-N-ethylated dimeric or polymeric Ub chains, which can be efficiently prepared by a one-pot, ubiquitin-activating enzyme (E1)-catalyzed condensation reaction of recombinant Ub precursors to give various homotypic and even branched Ub probes at multi-milligram scale. Proteomic studies using label-free quantitative (LFQ) MS indicated that the isopeptide-N-ethylated Ub probes may complement the triazole-based probes in the study of Ub interactome. Our study highlights the utility of modern protein synthetic chemistry to develop structurally and new families of tool molecules needed for proteomic studies.     

π-Interactions between Cyclic Carbocations and Aromatics Cause Zeolite Deactivation in Methanol-to-Hydrocarbon Conversion

The understanding of catalyst deactivation represents one of the major challenges for the methanol-to-hydrocarbon (MTH) reaction over acidic zeolites. Here we report the critical role of intermolecular π-interactions in catalyst deactivation in the MTH reaction on zeolites H-SSZ-13 and H-ZSM-5. π-interaction-induced spatial proximities between cyclopentenyl cations and aromatics in the confined channels and/or cages of zeolites are revealed by two-dimensional solid-state NMR spectroscopy. The formation of naphtalene as a precursor to coke species is favored due to the reaction of aromatics with the nearby cyclopentenyl cations and correlates with both acid density and zeolite topology.     

Probe-Free Direct Identification of Type I and Type II Photosensitized Oxidation Using Field-Induced Droplet Ionization Mass Spectrometry

While Type I and Type II photosensitizers are often carefully tailored to achieve their respective advantages in treating different cancers, the identifications of the Type I and II mechanisms as such, the key reaction intermediates, and the consequent oxidation products of the substrates have never been easy. Using our unique home-built field-induced droplet ionization mass spectrometry (FIDI-MS) method that selectively samples molecules at the air–water interface, here we show the facile determination of both Type I and II mechanisms of a poster-child photosensitizer, temoporfin, without the addition of any probes. The unstable doublet radical resulting from the hydrogen abstraction by the triplet temoporfin through the Type I mechanism is captured, manifesting the in situ advantage of FIDI-MS. We anticipate that the method developed in this study can be widely utilized in the future designs of novel photosensitizers and the screening of their photosensitization mechanisms.     

Two Cadmium(II) Coordination Polymers based on Pamoic Acid and Different Polydentate N-donor Ligands: Syntheses,Crystal Structures,and Fluorescence Properties

Two new fluorescent coordination polymers based on pamoic acid and different polydentate N-donor ligands, namely {[Cd(PA)(TPTZ)(H₂O)](DMF)₂}_n ( 1 ) and [Cd(PA)(BIB)]_n ( 2 ) [H₂PA = pamoic acid, TPTZ = 2,4,6-tri(2-pyridyl)-1,3,5-triazine, BIB = 1,4-bis(1-imidazolyl)benzene], were synthesized and characterized. Complex 1 showed a 1D zigzag chain structure with intramolecular hydrogen bonds. The 2D supramolecular structure in 1 was formed through π–π stacking interactions and intermolecular hydrogen bonds. Complex 2 displayed a 2D network structure. Intramolecular hydrogen bonds and π–π stacking interactions were observed in 2 . By studying the fluorescence sensing performance of two coordination polymers, complex 1 exhibited high selectivity for tracking Al³⁺ ion and complex 2 could discriminately detect inorganic or aliphatic amines with high selectivity.     

Synthesis and biological evaluation of novel indoleamide derivatives as antioxidative and antitumor agents

Novel indole amide derivatives C1-C10 were successfully synthesized and characterized by ¹H NMR, ¹³C NMR, IR, MS, and elemental analysis, and their molecular formulas were C₁₄H₁₀N₆O, C₁₃H₁₀N₄O, C₁₆H₁₃N₃O₂, C₁₉H₁₄N₂O₂, C₁₆H₁₁N₃OS, C₁₅H₁₃N₃O, C₁₂H₉N₅O, C₁₆H₁₀ClN₃OS, C₁₅H₁₇N₃O₂, and C₁₃H₁₄N₂O₃, respectively. The primary biological activities of these compounds were evaluated in vitro by the DPPH assay, H₂O₂-induced oxidative stress injury assay, and cytotoxicity assay. The results indicated that compounds C1, C2, C4, C7, and C9 exhibited DPPH·scavenging ability, while C3, C4, C5, and C8 showed potent growth-inhibitory activities against various human tumor cells, including MDA-MB-231, Hela, A549, and HT29. Interestingly, compound C4 showed potent scavenging effects on the DPPH radical and possessed protective effect on H₂O₂-induced oxidative stress injury in human neuroblastoma SH-SY5Y cells at low concentrations; however, C4 exhibited significant toxicity against four human tumor cells at a higher concentration in all treatments, and the range of IC₅₀ value was 7.91 to 13.35 μM.     

Short-focus nematic liquid crystal microlens array with a dielectric layer

ABSTRACT

A short-focus microlens array using dielectric layer and inhomogeneous electric field over a homogeneous nematic liquid crystal (LC) layer is proposed. The top substrate has a planar indium tin oxide (ITO) electrode which is coated on the inner surface. The bottom substrate has strip ITO electrodes which are embedded in the dielectric layers. The inhomogeneous electric field generates a required gradient refractive index profile within the LC layer which, in turn, causes the focusing effect. Due to the thinner LC layer (15 μm), the spherical aberration should be negligible. Moreover, the fabrication process of the proposed microlens array can be easily carried out because of the layer-by-layer configuration. The simulation results show that the focal length of the LC microlens can be continuously tuned from infinity to 0.988 mm with the change of applied voltage.     

Adaptive nematic liquid crystal lens array with resistive layer

ABSTRACT

We propose an adaptive nematic liquid crystal (LC) lens array using a dielectric layer with low dielectric constant as resistive layer. With the resistive layer and periodic-arranged iridium tin oxide (ITO) electrodes, the vertical electric field across the LC layer varies linearly over the lens aperture is obtained in the voltage-on state. As a result, a centrosymmetric gradient refractive index profile within the LC layer is generated, which causes the focusing behaviour. As a result of the optimisation, a thin cell gap which greatly reduces the switching time of the LC lens array can be achieved in our design. The main advantages of the proposed LC lens array are in the comparatively low operating voltage, the flat substrate surface, the simple electrodes, and the uniform LC cell gap. The simulation results show that the focal length of the LC lens array can be tuned continuously from infinity to 3.99 mm by changing the applied voltage.