Dimerisation and complexation of 6-(4′-t-butylphenylamino)naphthalene-2-sulphonate by β-cyclodextrin and linked β-cyclodextrin dimers

This study shows that stereochemical factors largely determine the extent to which 6-(4′-t-butylphenylamino)-naphthalene-2-sulphonate, BNS^?  and its dimer, (BNS^? )₂, are complexed by β-cyclodextrin, βCD, and a range of linked βCD dimers. Fluorescence and ¹H NMR studies, respectively, show that BNS^?  and (BNS^? )₂ form host–guest complexes with βCD of the stoichiometry βCD.BNS^?  (10^? 4 K ₁ = 4.67 dm³ mol^? 1) and βCD.BNS₂ ^2 ?  (10^? 2 K ₂′ = 2.31 dm³ mol^? 1), where the complexation constant K ₁ = [βCD.BNS^? ]/([βCD][BNS^? ]) and K ₂′ = [βCD. (BNS^? )₂]/([βCD.BNS^? ][BNS^? ]) in aqueous phosphate buffer at pH 7.0, I = 0.10 mol dm³ at 298.2 K. (The dimerisation of BNS^?  is characterised by 10^? 2 K _d = 2.65 dm³ mol^? 1.) For N,N-bis((2^AS,3^AS)-3^A-deoxy-3^A-β-cyclodextrin)succinamide, 33βCD₂su, N-((2^AS,3^AS)-3^A-deoxy-3^A-β-cyclodextrin)-N′-(6^A-deoxy-6^A-β-cyclodextrin)urea, 36βCD₂su, N,N-bis(6^A-deoxy-6^A-β-cyclodextrin)succinamide, 66βCD₂su, N-((2^AS,3^AS)-3^A-deoxy-3^A-β-cyclodextrin)-N′-(6^A-deoxy-6^A-β-cyclodextrin)urea, 36βCD₂ur, and N,N-bis(6^A-deoxy-6^A-β-cyclodextrin)urea, 66βCD₂ur, the analogous 10^? 4 K ₁ = 11.0, 101, 330, 29.6 and 435 dm³ mol^? 1 and 10^? 2 K ₂′ = 2.56, 2.31, 2.59, 1.82 and 1.72 dm³ mol^? 1, respectively. A similar variation occurs in K ₁ derived by UV–vis methods. The factors causing the variations in K ₁ and K ₂ are discussed in conjunction with ¹H ROESY NMR and molecular modelling studies.     

Low Band Gap Donor‐Acceptor Conjugated Polymer Nanoparticles and their NIR‐mediated Thermal Ablation of Cancer Cells

Low band gap D‐A conjugated PNs consisting of 2‐ethylhexyl cyclopentadithiophene co‐polymerized with 2,1,3‐benzothiadiazole (for nano‐PCPDTBT) or 2,1,3‐benzoselenadiazole (for nano‐PCPDTBSe) have been developed. The PNs are stable in aqueous media and showed no significant toxicity up to 1 mg · mL^?1. Upon exposure to 808 nm light, the PNs generated temperatures above 50 °C. Photothermal ablation studies of the PNs with RKO and HCT116 colorectal cancer cells were performed. At concentrations above 100 µg · mL^?1 for nano‐PCPDTBSe, cell viability was less than 20%, while at concentrations above 62 µg · mL^?1 for nano‐PCPDTBT, cell viability was less than 10%. The results of this work demonstrate that low band gap D‐A conjugated polymers 1) can be formed into nanoparticles that are stable in aqueous media; 2) are non‐toxic until stimulated by IR light and 3) have a high photothermal efficiency.

     

Automated,high performance,flow-through chemiluminescence microarray for the multiplexed detection of phycotoxins

A novel multiplexed immunoassay for the analysis of phycotoxins in shellfish samples has been developed. Therefore, a regenerable chemiluminescence (CL) microarray was established which is able to analyze automatically three different phycotoxins (domoic acid (DA), okadaic acid (OA) and saxitoxin (STX)) in parallel on the analysis platform MCR3. As a test format an indirect competitive immunoassay format was applied. These phycotoxins were directly immobilized on an epoxy-activated PEG chip surface. The parallel analysis was enabled by the simultaneous addition of all analytes and specific antibodies on one microarray chip. After the competitive reaction, the CL signal was recorded by a CCD camera. Due to the ability to regenerate the toxin microarray, internal calibrations of phycotoxins in parallel were performed using the same microarray chip, which was suitable for 25 consecutive measurements. For the three target phycotoxins multi-analyte calibration curves were generated. In extracted shellfish matrix, the determined LODs for DA, OA and STX with values of 0.5 ± 0.3 μg L⁻¹, 1.0 ± 0.6 μg L⁻¹, and 0.4 ± 0.2 μg L⁻¹ were slightly lower than in PBS buffer. For determination of toxin recoveries, the observed signal loss in the regeneration was corrected. After applying mathematical corrections spiked shellfish samples were quantified with recoveries for DA, OA, and STX of 86.2%, 102.5%, and 61.6%, respectively, in 20 min. This is the first demonstration of an antibody based phycotoxin microarray.     

Homochiral Ketals in Organic Synthesis. Enantioselective Synthesis of (4S, 5S)-4,5-Dihydroxycyclopent-2-En-1-One Isopropylidine Ketal

The title compound has been synthesized in 17% yield over six steps from 2-cyclopenten-1-one. The key step is catalytic osmylation of 4-bromo-2-cyclopenten-1-one 1,4-di-O-benzyl-D-threitol ketal to produce a chromatographically separable mixture of diastereomeric diols.     

A Convenient Synthesis of Hydrophenanthrenes the Synthesis of Ferrugindl and Xanthoperol

We wish to report an approach (equation 1) to hydrophenanthrenes which shows considerable promise of providing a general synthetic route for diterpenes, steroids, triterpenes, and tetraterpenes. Herein we illustrate the utility of this Friedel-Crafts type of procedure^3,6 by describing a synthesis of ferruginol (6) ⁷ and xanthoperol (8).⁸     

Error analysis of idealized nanopore sequencing

This numerical study provides an error analysis of an idealized nanopore sequencing method in which ionic current measurements are used to sequence intact single‐stranded DNA in the pore, while an enzyme controls DNA motion. Examples of systematic channel errors when more than one nucleotide affects the current amplitude are detailed, which if present will persist regardless of coverage. Absent such errors, random errors associated with tracking through homopolymer regions are shown to necessitate reading known sequences (Escherichia coli K‐12) at least 140 times to achieve 99.99% accuracy (Q40). By exploiting the ability to reread each strand at each pore in an array, arbitrary positioning on an error rate versus throughput tradeoff curve is possible if systematic errors are absent, with throughput governed by the number of pores in the array and the enzyme turnover rate.     

Cellulose polymorphism study with sum-frequency-generation (SFG) vibration spectroscopy: identification of exocyclic CH2OH conformation and chain orientation

Sum-frequency-generation (SFG) vibration spectroscopy is a technique only sensitive to functional groups arranged without centrosymmetry. For crystalline cellulose, SFG can detect the C6H₂ and intra-chain hydrogen-bonded OH groups in the crystal. The geometries of these groups are sensitive to the hydrogen bonding network that stabilizes each cellulose polymorph. Therefore, SFG can distinguish cellulose polymorphs (I_β, II, III_I and III_II) which have different conformations of the exocyclic hydroxymethylene group or directionalities of glucan chains. The C6H₂ asymmetric stretching peaks at 2,944 cm^?1 for cellulose I_β and 2,960 cm^?1 for cellulose II, III_I and III_II corresponds to the trans-gauche (tg) and gauche-trans (gt) conformation, respectively. The SFG intensity of the stretch peak of intra-chain hydrogen-bonded O–H group implies that the chain arrangement in cellulose crystal is parallel in I_β and III_I, and antiparallel in II and III_II.     

Using a cognitive architecture with a physiological substrate to represent effects of a psychological stressor on cognition

Adding a physiological representation to a cognitive architecture offers an attractive approach to modeling the effects of stress on cognition. We introduce ACT-R/Φ, an extended version of the ACT-R cognitive architecture that includes an integrative model of physiology. The extension allows the representation of how physiology and cognition interact. This substrate was used to represent potential effects of a startle response and task-based stress during a mental arithmetic (subtraction) task. We compare predictions from two models loaded into the new hybrid architecture to models previously developed within ACT-R. General behavior differed between models in that the ACT-R/Φ models had dynamic declarative memory noise over the course of the task based on varying epinephrine levels. They attempted more subtractions but were less accurate; this more closely matched human performance than the previous ACT-R models. Using ACT-R/Φ allows a more tractable integration of current physiological and cognitive perspectives on stress. ACT-R/Φ also permits further exploration of the interaction between cognition and physiology, and the emergent effects on behavior caused by the interaction among physiological subsystems. This extension is useful for anyone exploring how the human mind can occur in and be influenced by the physical universe.