Synthesis and Conformational Analysis of 2′-Deoxy-2′-(3-methoxybenzamido)adenosine,a rational-designed inhibitor of trypanosomal glyceraldehyde phosphate dehydrogenase (GAPDH)

A series of 2′-benzamido-2′-deoxyadenosine analogues were synthesized in an effort to find new lead structures for the treatment of sleeping sickness. The 2′-deoxy-2′-(3-methoxybenzamido)adenosine ( 1h ) was proved to be a selective inhibitor of the parasite glyceraldehyde 3-phosphate dehydrogenase which confirms the modeling studies. The solution-state conformation of 2′-(thiophene-2-carboxamido) analogue 1d demonstrates a 2′-endo conformation, an orientation of the thiophene ring under the ribose moiety, and the base part occupying a ‘syn’/‘anti’ equilibrium.     

Synthesis and characterization of new mono-, bis-, and tris-oxamato proligands

This communication presents the synthesis and the characterization of new organic molecules bearing up to three N-phenyl-oxalamic acid ethyl esters. The syntheses are based on Sonogashira-type cross-coupling reactions with preformed oxalamic ester intermediate building blocks. The short synthetic pathways lead easily to valuable potential oxamato-bridging ligands with overall interesting yields.     

Brownian dynamics of water confined in AOT reverse micelles: A field-cycling deuteron NMR relaxometry study

Reversed micelles and water in oil micro-emulsions can be used to solubilize biopolymers and genetic materials allowing analyzing their properties in a confined geometry. Nuclear Magnetic Resonance Dispersion (NMRD) provides a powerful and a noninvasive experimental technique to probe the long-term dynamics of these confined systems. However, the first step is to analyze and understand the slow dynamics of water inside these micro-reactors without any guest molecule. This is the aim of this presentation. Experimental results have been obtained for deuteron ²H NMRD of water confined in reverse micelles of bis (2-ethylhexyl) sodium sulfosuccinate (AOT) dispersed in isooctane C₈H₁₈. The water content is expressed as the molar ratio W₀ = [Water]/[AOT]. The radius of the spherical reversed micelles, R_m, increases almost linearly with W₀. In our case, W₀ is chosen in the range 20 ≤ W₀ ≤ 50 (35 ≤ R_m ≤ 80 Å). The frequency dependence for the spin-lattice relaxation rate R₁(ω) exhibits two regimes, for all W₀ values: a plateau at low frequency, proportional to 1/R_m, followed by the beginning of an algebraic decay. These experimental observations are discussed and compared to a numerical simulation of the intermittent Brownian diffusion of a water molecule inside a rotating reverse micelle. The possibility to probe some properties of the confinement, such as the localisation time on the sulfonated palisade and/or the water self-diffusion inside the water pool is emphasised.     

Accelerated weathering of polyaramid and polybenzimidazole firefighter protective clothing fabrics

Exposure to simulated ultraviolet sunlight at 50 °C and 50% relative humidity caused a significant deterioration in the mechanical performance of polyaramid and polyaramid/polybenzimidazole based outer shell fabrics used in firefighter jacket and pants. After 13 days of exposure to these conditions the tear resistance and tensile strength of both fabrics decreased by more than 40%. The polybenzimidazole containing fabric was less impacted by these conditions as it maintained approximately 20% more of its mechanical properties. These conditions also significantly degraded a water repellant coating on the fabric, which is critical to the water absorption performance of the outer shell fabrics. However, these conditions had little impact on the ultraviolet light protection of the outer shell as both fabrics still blocked 94% of ultraviolet light after 13 days of exposure. Confocal microscopy showed these conditions caused significant surface decomposition of and the switch from ductile to brittle failure of the polyaramid fibers. Cleavage of the amide linkages and the formation of oxidation species (as observed by Infrared spectroscopy) suggested these conditions caused photo-oxidation of the polyaramid fibers. There was little evidence of polybenzimidazole fiber degradation.     

Optimized conditions for 2‐aminobenzamide labeling and high‐performance liquid chromatography analysis of N‐acylated monosaccharides

The monosaccharides GlcNAc (N‐acetylglucosamine) and the home‐made GlcNC₁₆ (N‐palmitoyl‐D‐glucosamine) were labeled with 2‐AB (2‐aminobenzamide) by reductive amination of the sugar. The aldehyde group of the monosaccharide reacts with the amino group of 2‐AB, forming a Schiff base. In the second step, the Schiff base is reduced with sodium cyanoborohydride to yield a stable secondary amine. We describe here a simple and fast procedure. Previous studies reported the same labeling at high concentration (10^?1 M) during 30 h with further purification steps. In the present paper all operations were carried out in an Eppendorf tube and the reaction medium was directly analyzed without purification. Using the described protocol, the whole procedure can be accomplished in less than 6 h at 65°C at very low concentration (10^?4 M). For both GlcNC₁₆ and GlcNAc, the 2‐AB labeling conditions were optimized and, in addition, new conditions of high‐performance liquid chromatography analysis were developed. These N‐alkylated sugars were analyzed on reversed‐phase HPLC with fluorimetric detection at excitation and emission wavelengths of 340 and 400 nm, respectively. The separation was achieved on a C₁₈ column with a gradient mobile phase composed of water (0.1% formic acid)–methanol (volume varying) in less than 19 min with 12.5 and 18.3 min retention times for GlcNAc and GlcNC16, respectively. Positive‐ion electrospray ionization mass spectrometry (ESI‐MS) analysis enabled their structural determination. Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis of novel fused tricyclic quinolones: 4a,5‐Dihydro‐1H‐[1;2,4]triazino[1,6‐a]quinoline‐2,4,6(3H)‐triones

A versatile methodology to build the 1H‐[1,2,4]triazino[1,6‐a]quinoline‐2,4,6(3H)‐trione structure from methyl 6‐fluoro4‐oxo‐1,4‐dihydro‐2‐quinolinecarboxylate was developed. The method involves an N‐ami‐nation followed by condensation of an aroyl isocyanate to form an alpha semicarbazidocarboxylate that readily cyclizes to the fused [1,2,4]triazino ring under ammonia/ethanol condition. Also, the reactivity of the [1,2,4]triazino ring thus obtained was studied.     

Solution and crystallographic studies of branched multivalent ligands that inhibit the receptor-binding of cholera toxin

The structure-based design of multivalent ligands offers an attractive strategy toward high affinity protein inhibitors. The spatial arrangement of the receptor-binding sites of cholera toxin, the causative agent of the severe diarrheal disease cholera and a member of the AB(5) bacterial toxin family, provides the opportunity of designing branched multivalent ligands with 5-fold symmetry. Our modular synthesis enabled the construction of a family of complex ligands with five flexible arms each ending with a bivalent ligand. The largest of these ligands has a molecular weight of 10.6 kDa. These ligands are capable of simultaneously binding to two toxin B pentamer molecules with high affinity, thus blocking the receptor-binding process of cholera toxin. A more than million-fold improvement over the monovalent ligand in inhibitory power was achieved with the best branched decavalent ligand. This is better than the improvement observed earlier for the corresponding nonbranched pentavalent ligand. Dynamic light scattering studies demonstrate the formation of concentration-dependent unique 1:1 and 1:2 ligand/toxin complexes in solution with no sign of nonspecific aggregation. This is in complete agreement with a crystal structure of the branched multivalent ligand/toxin B pentamer complex solved at 1.45 A resolution that shows the specific 1:2 ligand/toxin complex formation in the solid state. These results reiterate the power of the structure-based design of multivalent protein ligands as a general strategy for achieving high affinity and potent inhibition.     

Nonspanning bivalent ligands as improved surface receptor binding inhibitors of the cholera toxin B pentamer

A series of bivalent ligands of varying length were synthesized to inhibit the receptor-binding process of cholera toxin. Competitive surface receptor binding assays showed that significant potency gains relative to the constituent monovalent ligands were achieved independently from the ability of the extended bivalent ligands to span binding sites within the toxin pentamer. Several models that could account for the unexpected improvement in IC(50) values are examined, taking into account crystallographic analysis of each ligand in complex with the toxin pentamer. Evidence is presented that steric blocking at the receptor binding surface may play a role. The results of our study suggest that the use of relatively short, "nonspanning" bivalent ligands, or monovalent ligands of similar topology and bulk may be an effective way of blocking the interaction of multimeric proteins with their cell surface receptors.