A full multiple scattering model for the analysis of time-resolved X-ray difference absorption spectra

A full multiple theoretical model (MXAN) is applied to fit picosecond difference X-ray absorption spectra at the ruthenium L(3) edge upon photoexcitation of aqueous [RuII(bpy)3]2+. We show that fitting difference spectra allows an increase in sensitivity, such that slight structural changes can be retrieved, which are not detected in fitting full spectra. The Ru-N bond distances of the excited complex in the (3)MLCT state are in good agreement with recently published values. The implementation of the present approach to L-edge spectra and its high sensitivity opens opportunities for its extension to a large class of experiments where difference X-ray absorption spectra are recorded.     

Analysis of the substrate specificity of the Dim-5 histone lysine methyltransferase using peptide arrays

Histone methylation is an epigenetic mark essential for gene regulation and development. We introduce peptide SPOT synthesis to study sequence specificity of the Dim-5 histone-3 lysine-9 methyltransferase. Dim-5 recognizes R8-G12 of the H3 tail with T11 and G12 being the most important specificity determinants. Exchange of H3 tail residue S10 and T11 by E strongly reduced methylation by Dim-5, suggesting that phosphorylation of S10 or T11 may regulate the activity of Dim-5. In the Dim-5/peptide structure, E227 interacts with H3R8 and D209 with H3-S10. Mutations of E227 or D209 caused predictable changes in the substrate preference, illustrating that peptide recognition of histone methyltransferases can be altered by protein design. Comparative analyses of peptide arrays with wild-type and mutant enzymes, therefore, are well suited to investigate the target specificity of protein methyltransferases and study epigenetic crosstalk.     

Ruthenium Catalyst Dichotomy: Selective Catalytic Diene Cycloisomerization or Metathesis

Ruthenium based catalysts are versatile promoters of a large variety of reactions. A catalytic system active in metathesis has been generated in situ from [RuCl₂(p‐cymene)]₂, 1,3‐bismesitylimidazolinium chloride, as precursor of a bulky carbene ligand, and cesium carbonate. We report that this three component catalytic system exhibits dichotomous reactivity for the transformation of dienes, providing an active catalytic system for the cycloisomerization of dienes to methylidene five‐membered cyclic molecules, whereas, in the presence of acetylene, a metathesis catalyst is generated that transforms the same dienes into cyclic olefins with loss of ethylene.     

Coexisting lamellar phases in water-oil-surfactant systems induced by the addition of an amphiphilic block copolymer

We report here a pioneering study using quadrupolar splitting NMR to detect new phases and phase compositions in the quasi-ternary microemulsion system water-decane-C(10)E(4)/PEP5-PEO5. The striking observation is that at certain compositions the polymer is apparently no longer incorporated into the membranes of the lamellar phase due to space restrictions. The polymer therefore induces a phase separation into two different lamellar phases L(alpha)(1) and L(alpha)(2) such that it fits into L(alpha)(1) while the excess surfactant forms a polymer-free L(alpha)(2) phase.     

Indachlorins: Nonplanar Indanone‐Annulated Chlorin Analogues with Panchromatic Absorption Spectra between 300 and 900 nm

Indaphyrins, pyrrole‐modified porphyrins containing a cleaved pyrrole β,β′‐bond and two annulated indanone moieties, possess unusually broadened and redshifted UV/Vis spectra because of their π‐expanded chromophores. The parent free base indaphyrin has been crystallographically characterized, highlighting its strongly ruffled conformation incorporating a helimeric twist. It was shown to be susceptible to regiospecific derivatizations at the opposite side of the ring‐cleaved pyrrole (dihydroxylation, followed by functional group transformations of the resulting diol functionality), generating indaphyrin‐based chlorin analogues, indachlorins, that incorporate a dihydroxypyrroline, pyrrolindione, oxazolone, or a morpholine moiety. Structural modifications resulted in further broadening and hyper‐ and bathochromic shifts of the optical spectra, some of which possess a nearly panchromatic absorption between 300 to well above 900 nm. The extents to which these modifications affect their solid‐state conformations were analyzed.     

Metamagnetism and single-chain magnetic behavior in a homospin one-dimensional iron(II) coordination polymer

Reaction of FeCl(2)·4H(2)O with KNCSe and pyridine in ethanol leads to the formation of the discrete complex [Fe(NCSe)(2)(pyridine)(4)] (1) in which the Fe(II) cations are coordinated by two N-terminal-bonded selenocyanato anions and four pyridine co-ligands. Thermal treatment of compound 1 enforces the removal of half of the co-ligands leading to the formation of a ligand-deficient (lacking on neutral co-ligands) intermediate of composition [Fe(NCSe)(2)(pyridine)(2)](n) (2) to which we have found no access in the liquid phase. Compound 2 is obtained only as a microcrystalline powder, but it is isotypic to [Cd(NCSe)(2)(pyridine)(2)](n) and therefore, its structure was determined by Rietveld refinement. In its crystal structure the metal cations are coordinated by two pyridine ligands and four selenocyanato anions and are linked into chains by μ-1,3 bridging anionic ligands. Magnetic measurements on compound 1 show only paramagnetic behavior, whereas for compound 2 an unexpected magnetic behavior is found, which to the best of our knowledge was never observed before for a iron(II) homospin compound. In this compound metamagnetism and single-chain magnetic behavior coexist. The metamagnetic transition between the antiferromagnetically ordered phase and a field-induced ferromagnetic phase of the high-spin iron(II) spin carriers is observed at a transition field H(C) of 1300 Oe and the single-chain magnetic behavior is characterized by a blocking temperature T(B), estimated to be about 5 K.     

How ionic liquids can help to stabilize native proteins

The native state of a globular protein is essential for its biocatalytic function, but is marginally stable against unfolding. While unfolding equilibria are often reversible, folding intermediates and misfolds can promote irreversible protein aggregation into amorphous precipitates or highly ordered amyloid states. Addition of ionic liquids-low-melting organic salts-offers intriguing prospects for stabilizing native proteins and their enzymatic function against these deactivating reaction channels. The huge number of cations and anions that form ionic liquids allows fine-tuning of their solvent properties, which offers robust and efficient strategies for solvent optimization. Going beyond case-by-case studies, this article aims at discussing principles for a rational design of ionic liquid-based formulations in protein chemistry and biocatalysis.     

Elemental distribution and thermoelectric properties of layered tellurides 39R-M(0.067)Sb(0.667)Te(0.266) (M=Ge, Sn)

The isostructural phases 39R‐Ge_0.067Sb_0.667Te_0.266 (R$\bar 3The isostructural phases 39R-Ge(0.067)Sb(0.667)Te(0.266) (R3m, a=4.2649(1), c=75.061(2) ?) and 39R-Sn(0.067)Sb(0.667)Te(0.266) (R3m, a=4.2959(1), c=75.392(2) ?) were prepared by quenching stoichiometric melts of the pure elements and subsequent annealing at moderate temperatures. Their structures are comparable to "superlattices" synthesized by layer-by-layer deposition onto a substrate. These structures show no stacking disorder by electron microscopy. The structure of the metastable layered phases are similar to that of 39R-Sb(10)Te(3) (equivalent to Sb(0.769)Te(0.231)), which contains four A7 gray-arsenic-type layers of antimony alternating with Sb(2)Te(3) slabs. Joint refinements on single-crystal diffraction data using synchrotron radiation at several K edges were performed to enhance the scattering contrast. These refinements show that the elemental distributions at some atom positions are disordered whereas otherwise the structures are long-range ordered. The variation of the elemental concentration correlates with the variation in interatomic distance. Z-contrast scanning transmission electron microscopy (HAADF-STEM) on 39R-Ge(0.067)Sb(0.667)Te(0.266) confirms the presence of concentration gradients. The carrier-type of the isostructural metal (A7-type lamellae)-semiconductor heterostructures (Ge/Sn-doped Sb(2)Te(3) slabs) varies from n-type (Ge(0.067)Sb(0.667)Te(0.266)) to p-type (Sn(0.067)Sb(0.667)Te(0.266)). Although the absolute values of the Seebeck coefficient reached about 50-70 μV/K and the electrical conductivity is relatively high, the two isotypic phases exhibit a maximal thermoelectric figure of merit (ZT) of 0.06 at 400 °C as their thermal conductivity (κ≈8-9.5 W/mK at 400 °C) lies interestingly in between that of antimony and pure Sb(2)Te(3).     

Fragmentation methods on the balance: unambiguous top–down mass spectrometric characterization of oxaliplatin–ubiquitin binding sites

The interaction between oxaliplatin and the model protein ubiquitin (Ub) was investigated in a top–down approach by means of high-resolution electrospray ionization mass spectrometry (ESI-MS) using diverse tandem mass spectrometric (MS/MS) techniques, including collision-induced dissociation (CID), higher-energy C-trap dissociation (HCD), and electron transfer dissociation (ETD). To the best of our knowledge, this is the first time that metallodrug–protein adducts were analyzed for the metal-binding site by ETD-MS/MS, which outperformed both CID and HCD in terms of number of identified metallated peptide fragments in the mass spectra and the localization of the binding sites. Only ETD allowed the simultaneous and exact determination of Met1 and His68 residues as binding partners for oxaliplatin. CID-MS/MS experiments were carried out on orbitrap and ion cyclotron resonance (ICR)-FT mass spectrometers and both instruments yielded similar results with respect to number of metallated fragments and the localization of the binding sites. A comparison of the protein secondary structure with the intensities of peptide fragments generated by collisional activation of the [Ub + Pt-(chxn)] adduct [chxn = (1R,2R)-cyclohexanediamine] revealed a correlation with cleavages in solution phase random coil areas, indicating that the N-terminal β-hairpin and α-helix structures are retained in the gas phase.     

Context-dependent behavior of the enterocin iterative polyketide synthase; a new model for ketoreduction

Heterologous expression and mutagenesis of the enterocin type II polyketide synthase (PKS) system suggest for the first time that the association of an extended set of proteins and substrates is needed for the effective production of the enterocin-wailupemycin polyketides. In the absence of its endogenous ketoreductase (KR) EncD in either the enterocin producer "Streptomyces maritimus" or the engineered host S. lividans K4-114, the enterocin minimal PKS is unable to produce benzoate-primed polyketides, even when complemented with the homologous actinorhodin KR ActIII or with EncD active site mutants. These data suggest that the enterocin PKS requires EncD to serve a catalytic and not just a structural role in the functional PKS enzyme complex. This strongly implies that EncD reduces the polyketide chain during elongation rather than after its complete assembly, as suggested for most type II PKSs.