Photon antibunching and collective effects in the fluorescence of single bichromophoric molecules

The fluorescence of individual pairs of perylenemonoimide chromophores coupled via a short rigid linker is investigated. Photon antibunching is reported, indicating collective effects in the fluorescence, which are further substantiated by the observation of collective triplet off times and triplet lifetime shortening. The experimental findings are analyzed in terms of singlet-singlet and singlet-triplet annihilation based on F?rster type energy transfer. The results reported here demonstrate that the statistical properties of the emission light of isolated single quantum systems can serve as a hallmark of intermolecular interactions.     

Nano-high-performance liquid chromatography in combination with nano-electrospray ionization Fourier transform ion-cyclotron resonance mass spectrometry for proteome analysis

Fourier transform ion-cyclotron resonance (FTICR) mass spectrometry offers several advantages for the analysis of biological samples, including excellent mass resolution, ultra-high mass measurement accuracy, high sensitivity, and wide mass range. We report the application of a nano-HPLC system coupled to an FTICR mass spectrometer equipped with nanoelectrospray source (nano-HPLC/nano-ESI-FTICRMS) for proteome analysis. Protein identification in proteomics is usually conducted by accurately determining peptide masses resulting from enzymatic protein digests and comparing them with theoretically digested protein sequences from databases. A tryptic in-solution digest of bovine serum albumin was used to optimize experimental conditions and data processing. Spots from Coomassie Blue and silver-stained two-dimensional (2D) gels of human thyroid tissue were excised, in-gel digested with trypsin, and subsequently analyzed by nano-HPLC/nano-ESI-FTICRMS. Additionally, we analyzed 1D-gel bands of membrane preparations of COS-6 cells from African green monkey kidney as an example of more complex protein mixtures. Nano-HPLC was performed using 1-mm reverse-phase C-18 columns for pre-concentration of the samples and reverse-phase C-18 capillary columns for separation, applying water/acetonitrile gradient elution conditions at flow rates of 200 nL/min. Mass measurement accuracies smaller than 3 ppm were routinely obtained. Different methods for processing the raw data were compared in order to identify a maximum number of peptides with the highest possible degree of automation. Parallel identification of proteins from complex mixtures down to low-femtomole levels makes nano-HPLC/nano-ESI-FTICRMS an attractive approach for proteome analysis.     

Polarizability effects and dispersion interactions in alkene-Br2 pi-complexes

Weakly bound molecular complexes play an important role in chemistry, physics, and biodisciplines. The preequilibrium pi-complexes of various alkenes with bromine have been examined quantitatively, and a direct relationship between association constants (KF) of these pi-complexes and polarizability of the olefins was found. The stability of the Br2-olefin pi complexes is affected by both the donor ionization potential and the polarizability of the olefin, and an equation able to take into account both effects is proposed.     

Dipolar couplings in multiple alignments suggest alpha helical motion in ubiquitin

Recently, residual dipolar couplings (RDCs) of backbone N-HN vectors measured in 11 different alignment media were analyzed with respect to structure and dynamics in a model-free way in terms of generalized order parameters and motional anisotropies. The anisotropies in the central alpha-helix were found to be strikingly uniformly distributed. In this communication, these parameters are further interpreted in terms of physically feasible cooperative reorientational motion of the helix with respect to the core of the protein. The RDCs are compatible with a model in which all N-HN vectors of the alpha-helix of ubiquitin exhibit correlated anisotropic excursions with amplitudes of 21 degrees and 12 degrees along two orthogonal directions x' ' and y' ' of a coordinate system C' ', if z' ' represents the helix axis. Such motion contradicts neither NOE data nor molecular force-field calculations.     

Sonochemical degradation of phenol in water: a comparison of classical equipment with a new cylindrical reactor

Cavitation due to ultrasonic waves produces highly reactive oxidising species in water. As a result, it can be used to oxidise organic pollutants such as aromatic compounds in dilute aqueous solutions. Recent studies have demonstrated that reactors operating in the high frequency range (e.g. 500 kHz) are more efficient than reactors working at lower frequency (20 kHz) for the destruction of these kinds of contaminants. Our study describes the degradation of phenol with the help of a cylindrical ultrasonic apparatus that operates at 35 kHz (Sonitube-SODEVA). To date, the use of this type of reactor has not been reported. The reaction rates thus obtained were compared to those obtained at the same ultrasonic power (50 W) with more classical devices operating at 20 and 500 kHz. The general result is that in aqueous solution, the rate of phenol destruction is higher at 500 kHz than at 35 or 20 kHz. Addition of hydrogen peroxide and copper sulphate to the medium provides a different oxidative system that proceeds more efficiently at 35 kHz; the time of destruction was about one-third of the time needed at 500 kHz. It was also observed that the intermediate organic compounds are eliminated much faster at 35 kHz in comparison with the two frequencies. The observation of such different behaviour is not necessarily a pure frequency effect, but can be due to a response to other parameters such as the acoustic field and intensity.