Use of the MALDI BioTyper system with MALDI–TOF mass spectrometry for rapid identification of microorganisms

In a clinical diagnosis microbiology laboratory, the current method of identifying bacterial isolates is based mainly on phenotypic characteristics, for example growth pattern on different media, colony morphology, Gram stain, and various biochemical reactions. These techniques collectively enable great accuracy in identifying most bacterial isolates, but are costly and time-consuming. In our clinical microbiology laboratory, we prospectively assessed the ability of matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI–TOF MS) to identify bacterial strains that were routinely isolated from clinical samples. Bacterial colonies obtained from a total of 468 strains of 92 bacterial species isolated at the Department of Clinical Laboratory at Chiba University were directly placed on target MALDI plates followed by addition of CHCA matrix solution. The plates were then subjected to MALDI–TOF MS measurement and the microorganisms were identified by pattern matching with the libraries in the BioTyper 2.0 software. Identification success at the species and genus levels was 91.7% (429/468) and 97.0% (454/468), respectively. MALDI–TOF MS is a rapid, simple, and high-throughput proteomic technique for identification of a variety of bacterial species. Because colony-to-colony differences and effects of culture duration on the results are minimal, it can be implemented in a conventional laboratory setting. Although for some pathogens, preanalytical processes should be refined, and the current database should be improved to obtain more accurate results, the MALDI–TOF MS based method performs, in general, as well as conventional methods and is a promising technology in clinical laboratories.     

alpha-Aminoallylation of aldehydes with ammonia: stereoselective synthesis of homoallylic primary amines

Three-component reactions of aldehydes, ammonia, and allylboronates were found to provide homoallylic primary amines in high yields with high chemo- and stereoselectivities. A two-step, one-pot, stereoselective synthesis of an uncommon alpha-amino acid, alloisoleucine, was achieved utilizing this reaction.     

Reversible immobilization of engineered molecules by Ni-NTA chelators

Electrochemical synthesis of nickel-nitrilotriacetic acid (Ni-NTA) chelators, for subsequent immobilization of (His)(6)-tagged proteins (Photosystem II (PSII) as model molecule), on Au or Au-graphite electrodes is compared to chemical synthesis. Results show: (i) higher Ni-NTA surface density, (ii) shorter treatment time (1-12 min vs. 16 h normally needed for self-assembled monolayer (SAM)), (iii) possibility of addressing the chelator to only one Au electrode, in a sensor micro-array.     

Novel enantioselective direct aldol-type reaction promoted by a chiral phosphine oxide as an organocatalyst

Chiral phosphine oxide successfully catalyzed the direct aldol-type reactions of cyclohexanone derivatives and benzaldehyde derivatives in high stereoselectivities. The reaction mechanism involves the in situ formation of trichlorosilyl enol ethers. The present reaction could be extended to the cross-aldol reactions between two aldehydes.     

Synthesis of chiral 3,3′-disubstituted 1,1′-binaphthyl-2,2′-disulfonic acids

A convenient synthesis of chiral 3,3′-disubstituted 1,1′-binaphthyl-2,2′-disulfonic acids (BINSA, 1) was developed. The key was directed ortho-lithiation of BINSA methyl ester 2 with n-BuLi and subsequent reaction with an electrophile. Electrophiles such as Br₂, I₂, Me₃SiOTf, and i-PrOB(Pin) reacted smoothly with 3,3′-dilithiated BINSA methyl ester, and the corresponding 3,3′-dihalo-, 3,3′-bis(trimethylsilyl)-, and 3,3′-diboryl-BINSA derivatives were obtained in yields of 21–78%. This simple synthetic method is highly attractive since the ability to prepare 3,3′-disubstituted BINOLs in advance can be useful.     

Mechanistic discussion of cationic crosslinking copolymerizations of 1,2‐epoxycyclohexane with diepoxide crosslinkers accompanied by intramolecular and intermolecular chain transfer reactions

Our previous mechanistic discussion of the free‐radical crosslinking monoallyl/diallyl copolymerizations was extended to the cationic crosslinking monoepoxide/diepoxide copolymerizations, typically including 1,2‐epoxycyclohexane (ECH) as a monoepoxide and bis[3,4‐epoxycyclohexylmethyl] adipate (BECHMA) as a diepoxide crosslinker. In the cationic polymerization, oligomer is usually obtained because of the occurrence of characteristic chain‐forming reactions. Therefore, cationic crosslinking monoepoxide/diepoxide copolymerizations could be in the category of the network formation through free‐radical crosslinking monoallyl/diallyl copolymerizations. Thus, the gelation behavior was discussed by comparing the actual gel points with the theoretical ones; the greatly delayed gelation from theory was observed. Then, the resulting network polymer precursors (NPPs) were characterized by SEC‐MALLS‐viscometry to clarify the cationic crosslinking ECH/BECHMA copolymerization mechanism. Notably, the correlation lines of molecular weight versus elution volume were specific for the NPPs obtained at a high conversion close to the gel point as compared with those obtained by the free‐radical crosslinking monoallyl/diallyl copolymerization. This may be ascribed to the occurrence of intramolecular and intermolecular chain transfer reactions characteristic of cationic polymerization; the chain transfer reactions involve the intramolecular and intermolecular nucleophilic attack of ether oxygen or terminal hydroxyl oxygen in the NPPs to a terminal growing cation that leads to the formation of not only the loop‐ but also the crosslink‐structures containing NPPs, providing fragile ultrahigh‐molecular‐weight NPP in the SEC columns. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

Conversion of antennapedia homeodomain to zinc finger-like domain: Zn(II)-induced change in protein conformation and DNA binding

From the standpoint of protein dynamics and metalloprotein design, it is interesting to create an artificial protein which induces structural change and regulates its function by metal-ion binding. We engineered a novel protein, "Antennafinger (Ant-F)", whose structure and function can be controlled with Zn(II), by introducing the consensus sequence of a Cys(2)His(2)-type zinc finger protein into a non-metalloprotein scaffold, an Antennapedia homeodomain mutant (Ant-wt), selected using a motif-searching system. The circular dichroism studies demonstrate that Ant-F has secondary structures similar to Ant-wt and also changes its conformation due to Zn(II)-binding. The optical absorption spectra of the Co(II) complexes of Ant-F and its derivative proteins suggest that the geometry of the metal center of holo-Ant-F is tetrahedral and that the mutated Cys(2)His(2) residues are involved in the complex formation. In addition, the gel mobility shift assay reveals that the DNA binding activity of Ant-F can be regulated through Zn(II)-induced structural alteration. These results provide valuable information about the dynamic properties of proteins and a novel concept for metalloprotein design.