The development of an integrated platform to identify breast cancer glycoproteome changes in human serum

Protein glycosylation represents one of the major post-translational modifications and can have significant effects on protein function. Moreover, changes in the carbohydrate structure are increasingly being recognized as an important modification associated with cancer etiology. In this report, we describe the development of a proteomics approach to identify breast cancer related changes in either concentration and/or the carbohydrate structures of glycoprotein(s) present in blood samples. Diseased and healthy serum samples were processed by an optimized sample preparation protocol using multiple lectin affinity chromatography (M-LAC) that partitions serum proteins based on glycan characteristics. Subsequently, three separate procedures, 1D SDS-PAGE, isoelectric focusing and an antibody microarray, were applied to identify potential candidate markers for future study. The combination of these three platforms is illustrated in this report with the analysis of control and cancer glycoproteomic fractions. Firstly, a molecular weight based separation of glycoproteins by 1D SDS-PAGE was performed, followed by protein, glycoprotein staining, lectin blotting and LC–MS analysis. To refine or confirm the list of interesting glycoproteins, isoelectric focusing (targeting sialic acid changes) and an antibody microarray (used to detect neutral glycan shifts) were selected as the orthogonal methods. As a result, several glycoproteins including alpha-1B-glycoprotein, complement C3, alpha-1-antitrypsin and transferrin were identified as potential candidates for further study.     

Some New Radical Reactions of Xanthates

Xanthates are convenient precursors of a variety of radicals that can be captured in an inter- or intramolecular fashion. Overall, the process involves rupture of the sulfide C-S bond and addition of the elements of the xanthate to the olefinic trap. The xanthate in the product can be used in another radical sequence or ionically modified in a great variety of ways. S-Propargyl xanthates exhibit a special but interesting behaviour which involves a sigmatropic rearrangement to the corresponding allene and ring closure to a novel betaine.     

Exact solution of a class of nonlinear knapsack problems

We consider a class of nonlinear knapsack problems with applications in service systems design and facility location problems with congestion. We provide two linearizations and their respective solution approaches. The first is solved directly using a commercial solver. The second is a piecewise linearization that is solved by a cutting plane method.     

Analysis of Ti:LiNbO3 zero-gap directional coupler for wavelength division multiplexer/demultiplexer

For the purpose of multichannel integrated-optical wavelength division MUX/DEMUX design, the wavelength tuning method of Ti:LiNbO₃ zero-gap directional coupler is analysed by effective-index based matrix method (EIMM). In this method, first, the 2D refractive index profile of the Ti:LiNbO₃ zero-gap directional coupler is transformed into lateral 1D effective-index profile by WKB method. Finally, matrix method is applied to this effective-index profile and the propagation constants are computed from the resonance peaks of the excitation efficiency versus propagation constant characteristics. It has been shown that the channel wavelength tuning can be achieved by varying the Y-branching angle at the input and output of the device or by a slight variation of two-mode-section length. The method of electro-optic fine tuning of the channel wavelength and channel separation of the device has also been investigated. A cascaded structure with proper parameters for four-channel application is also simulated and the results are presented.     

Simultaneous Spectrophotometric Determination of Imipramine Hydrochloride with Chlordiazepoxide and Nortriptyline Hydrochloride with Fluphenazine Hydrochloride

Spectrophotometry was used with multivariate calibration to simultaneously determine compounds in mixtures. Two antidepressant mixtures were investigated: imipramine hydrochloride and chlordiazepoxide and nortriptyline hydrochloride and fluphenazine hydrochloride. Considerable spectral overlap and large differences in component concentrations were challenges. Since this type of analysis is often performed using complex algorithms, a simple strategy was used here for the simultaneous determination of both mixture components by classical least squares, principal component regression, and partial least squares. Experimental design was used to select the optimum parameters including the wavelength range, sampling interval, software, and derivative order. Accuracy was enhanced by proper wavelength selection. In addition, derivatives of the raw spectra improved the selectivity. The standard deviation, deviation of mean recovery from 100%, and prediction ability of the models were used as the responses. In respect to these terms, first-order derivatization of the spectra and a sampling interval of 1?nm provided the best results. In particular, the low concentration compounds in the mixtures (chlordiazepoxide and fluphenazine) were determined more accurately with precision lower than 3%. The strategy was used for the quality control of pharmaceuticals containing the mixtures without chemical pretreatment.     

Chemical and Photochemical Water Oxidation Catalyzed by Mononuclear Ruthenium Complexes with a Negatively Charged Tridentate Ligand

Two mononuclear ruthenium complexes [RuL(pic)₃] ( 1 ) and [RuL(bpy)(pic)] ( 2 ) (H₂L=2,6‐pyridinedicarboxylic acid, pic=4‐picoline, bpy=2,2′‐bipyridine) have been synthesized and fully characterized. Both complexes could promote water oxidation chemically and photochemically. Compared with other known ruthenium‐based water oxidation catalysts using [Ce(NH₄)₂(NO₃)₆] (Ce^IV) as the oxidant in solution at pH 1.0, complex 1 is one of the most active catalysts yet reported with an initial rate of 0.23 turnover s^?1. Under acidic conditions, the equatorial 4‐picoline in complex 1 dissociates first. In addition, ligand exchange in 1 occurs when the Ru^III state is reached. Based on the above observations and MS measurements of the intermediates during water oxidation by 1 using Ce^IV as oxidant, [RuL(pic)₂(H₂O)]⁺ is proposed as the real water oxidation catalyst.     

Photocatalytic degradation of an azo reactive dye,Reactive Yellow 84, in water using an industrial titanium dioxide coated media

The photocatalytic degradation of an azo reactive dye, Reactive Yellow 84 (RY84), in aqueous solutions using industrial titanium dioxide coated non-woven paper was studied. The experiments were carried out to investigate the factors that influence the dye photocatalytic degradation, such as adsorption, initial concentration of dye, temperature, and solution pH. The experimental results show that adsorption is an important parameter controlling the apparent kinetics constant of degradation. The photocatalytic degradation rate was favored by a high concentration of solution in respect to Langmuir–Hinshelwood model. The degradation was enhanced by the temperature and was favored in acidic pH range.     

The CH3D absorption spectrum in the 1.58 μm transparency window of methane: Empirical line lists at 81 K and 294 K and temperature dependence

In spite of its low isotopic abundance in methane (about 5×10⁻⁴), CH₃D contributes greatly to the very weak absorption in the 1.58 μm methane transparency window. This methane window deserves to be characterized in details because it is important for planetary applications in particular for Titan and the giant planets. In this work, we recorded the CH₃D spectrum by high sensitivity differential absorption spectroscopy (α_min≈5×10⁻⁸ cm⁻¹) both at room temperature and at 81 K. A list of more than 9000 lines was constructed from the 81 K spectrum for the 6099–6530 cm⁻¹ region. In order to get the temperature dependence of the line intensities, the low energy values have to be determined. The rovibrational assignments available in the literature provide low energy values for about 380 strong transitions of the region. This is insufficient to characterize the temperature dependence of the CH₃D absorption between 6200 and 6400 cm⁻¹. In this interval, a list of 5500 lines was constructed from the room temperature spectrum. The empirical energy values of the transitions were derived from the ratio of the intensities at 81 K and 294 K. The exact and empirical lower state energies included in the final line lists provided as Supplementary Material, allow for accounting for the temperature dependence of the CH₃D spectrum in the entire 6099–6530 cm⁻¹ region.Our measurements have been compared to the spectroscopic parameters and assignments available in the literature in particular those adopted in the HITRAN database. Improvements and corrections are proposed for the wavenumber calibration and for some lower state energies.     

ON THE SUPERSTABILITY OF THE PEXIDER TYPE GENERALIZED TRIGONOMETRIC FUNCTIONAL EQUATIONS

The aim of this paper is to investigate the superstability problem for the pexiderized trigonometric functional equation∑ v∈Φ∫Kf(xkv(y)k-1)dwK(k)= Φ g(x)h(y), x, y ∈ G,where G is any topological group, K is a compact subgroup of G, ωK is the normalized Haar measure of K, Φ is a finite group of K-invariant morphisms of G and f, g, h are continuous complex-valued functions.Consequently, we have generalized the results of stability for d'Alembert's and Wilson's equations by R. Badora, J. Baker, B. Bouikhalene, P. Gavruta, S. Kabbaj, Pl. Kannappan, G. H.Kim, J.M. Rassias, A. Roukbi, L. Sz′ekelyhidi, D. Zeglami, etc.     

Characterization of Function Spaces for the Dunkl Type Operator on the Real Line

In this work we consider the Dunkl operator on the real line, defined by $$ {\cal D}_kf(x):=f'(x)+k\dfrac{f(x)-f(-x)}{x},\,\,k\geq0. $$ We define and study Dunkl–Sobolev spaces \(L^p_{n,k}(\mathbb{R})\) , Dunkl–Sobolev spaces \({\cal L}^p_{\alpha,k}(\mathbb{R})\) of positive fractional order and generalized Dunkl–Lipschitz spaces \(\wedge^k_{\alpha,p,q}(\mathbb{R})\) . We provide characterizations of these spaces and we give some connection between them.