Photoactivity and UV absorption spectroscopy of RCo(CO)4 (R = H, CH3) organometallic complexes

The photoactivity of RCo(CO)4 (R = H, CH3) complexes has been investigated and compared by means of state correlation diagrams connecting the low-lying singlet (1)E (d(Co) --> sigma*(Co-R) and d(Co) --> pi*(CO)) and (1)A1 (d(Co) --> pi*(CO)) electronic states accessible through UV irradiation, and the low-lying triplet states ((3)E and (3)A1), to the corresponding states of the primary products R + Co(CO)4 and CO(ax) + RCo(CO)3. The electronic absorption spectra have been calculated by time-dependent wave packet propagations on two-dimensional potential energy surfaces describing both channels of dissociation, namely the homolysis of the R-Co and the CO(ax)-Co bonds. It is shown that the absorption spectrum of HCo(CO)4 is characterized by two peaks; the most intense peaks for each set are located respectively at 42,659 and 45,001 cm(-1). The CH(3)Co(CO)4 absorption spectrum also gives two sets of signals with maximum intensities found at 42,581 and 51,515 cm(-1). These bands for both molecules are assigned to the two metal-to-ligand-charge-transfer (MLCT; d(Co) --> pi*(CO)) states. Three photoactive states have been determined in both molecules, namely the singlet metal-to-sigma-bond-charge-transfer (MSBCT) states (a(1)E and b(1)E), simultaneously dissociative for both the homolysis of CO and the R-Co bond, and the (3)A1 (sigma(Co-R) --> sigma*(Co-R)), dissociative along the R-Co bond.     

Molecular insights into azumamide e histone deacetylases inhibitory activity

Azumamide E, a cyclotetrapeptide isolated from the sponge Mycale izuensis, is the most powerful carboxylic acid containing natural histone deacetylase (HDAC) inhibitor known to date. In this paper, we describe design and synthesis of two stereochemical variants of the natural product. These compounds have allowed us to clarify the influence of side chain topology on the HDAC-inhibitory activity. The present contribution also reveals the identity of the recognition pattern between azumamides and the histone deacetylase-like protein (HDLP) model receptor and reports the azumamide E unprecedented isoform selectivity on histone deacetylases class subtypes. From the present studies, a plausible model for the interaction of azumamides with the receptor binding pocket is derived, providing a framework for the rational design of new cyclotetrapeptide-based HDAC inhibitors as antitumor agents.     

Computing stationary distributions in equilibrium and nonequilibrium systems with forward flux sampling

We present a method for computing stationary distributions for activated processes in equilibrium and nonequilibrium systems using forward flux sampling. In this method, the stationary distributions are obtained directly from the rate constant calculations for the forward and backward reactions; there is no need to perform separate calculations for the stationary distribution and the rate constant. We apply the method to the nonequilibrium rare event problem proposed by Maier and Stein, to nucleation in a 2-dimensional Ising system, and to the flipping of a genetic switch.     

Theoretical study of the electronic structure of MCH(2)(+)(M=Fe,Co,Ni)

State of the art coupled cluster (CC) methods are applied to accurately characterize the ground state electronic structure and photoelectron spectra of transition metal carbene ions MCH(2) (+) (M=Fe, Co, and Ni). The geometries and energies of the lowest energy quartet, triplet, and doublet electronic states as well as several low-lying vertical excitation energies of FeCH(2) (+), CoCH(2) (+), and NiCH(2) (+) are reported. The excitation energies are computed using the equation-of-motion CC and for states of different symmetries, by the energy differences of single reference ground and excited states (Delta-CC). The latter employ several reference states; the unrestricted Hartree-Fock, restricted open shell Hartree-Fock, and unrestricted Kohn-Sham. We conclude that the (2)A(1) electronic ground state of NiCH(2) (+) is separated by about 30.0 kJ/mol from the next highest state, and the lowest (4)B(1) and (4)B(2) states of FeCH(2) (+) as well as the (3)A(2) and (3)A(1) states of CoCH(2) (+) are nearly degenerate. The presence of metal-pi*(MCH(2)) charge transfer states with significant oscillator strengths in the visible/near-UV energy domain of the theoretical spectra of FeCH(2) (+) and CoCH(2) (+) are at the origin of the photofragmentation of these compounds observed after irradiation between 310 and 360 nm.     

Solar purification and potabilization of water containing dyes

Organic pollutant removal is the main field of water photocatalytic decontamination. Molecules such as pesticides (herbicides, insecticides, fungicides, etc.) or dyes are totally destroyed and mineralized into CO₂ and innocuous inorganic anions (Cl^?, SO ₄ ^2? , NO ₃ ^? ). Presently, two azo-dyes (i.e., containing the-N=N-azo group), Cibacron Brilliant Red 3B-A and Remazol Black B (Reactive Black 5), were successfully destroyed and totally mineralized. The stoichiometric coefficients of the total degradation, as well as the mass balances have been established with different analytical tools: TOC for carbon, DCO for oxygen, ionic-HPLC for heteroatoms (N, S, P) and pH-metry for hydrogen. Moreover, nitrogen balance has been established during the photocatalytic degradation of the dyes by considering not only nitrate and ammonium ions in the solution, but also the formation of N₂ in the gas phase. The quantification of N₂ molecules suggests that the photocatalytic degradation of azo-compounds is 100% selective in generating gaseous dinitrogen. The reaction mechanism was first determined in a laboratory photoreactor, before degradation in larger pilot solar photoreactors, using UV-A radiant flux from the sun in a new sub-discipline called heliophotocatalysis.     

Near-infrared nitrofluorene substitued aza-Boron-dipyrromethenes dyes

The synthesis, spectroscopic properties, and TD-DFT calculations of new aza-Boron-dipyromethene dyes featuring pendant nitrofluorenylethynyl substituents are described. This functionalization allows for moving the luminescence in the NIR, conserving a good quantum yield efficiency.     

Comparison of two innovatives approaches for bacterial detection: paramagnetic nanoparticles and self-assembled multilayer processes

Transfusion medicine is a field that has developed in the second half of the last century. Very rapidly, however, it became clear that this approach also carried its problems, such as the incompatibility of red blood cells and plasma between donors and recipients, and the possibility of transmitting viral and bacterial infections. An immunomagnetic biosensor for the label-free detection of a bacterial model, Escherichia coli, is described and compared to a self assembled multilayer system reported previously. The paramagnetic nanoparticles layer attracted to, and formed on, the gold electrode surface via a magnetic field up to 300 mT is not totally blocking for the redox probe comparing to the thiol self assembled monolayer (a biotin thiol and a spacer thioalcohol). Moreover, the modeling of the Nyquist spectra obtained by electrochemical impedance spectroscopy for increasing concentrations of E. coli shows for both system a sigmoid variation of the polarization resistance with increasing logarithmic concentration of bacteria. A sensitivity slope of 10.675 was obtained for the immunomagnetic sensor compared to 6.832 for the self assembled multilayer process, this indicating the higher sensitivity of the paramagnetic nanoparticles biosensor.     

Stable near-infrared anionic polymethine dyes: structure, photophysical, and redox properties

The concept of cyanine has been successfully extended to an anionic heptamethine dye featuring tricyanofuran (TCF) moieties in terms of structure, reactivity, and photophysical properties. Importantly, absorption and emission are red-shifted compared to its classical cationic analog without any cost in terms of thermal stability. In addition to its "cyanine" behavior, this molecule exhibits further redox properties: oxidation and reduction led to the reversible formation of radical species whose absorption is in marked contrast with that of cyanines.     

Novel neutral imidazole-lipophosphoramides for transfection assays

New helper lipids, possessing an imidazole polar head, have been synthesized and included in formulations for transfection assays; these new helper lipids can improve the transfection by a factor of up to 100 compared to the use of DOPE as co-lipid.