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991.
Jing-Yuan Chang Yen-Jin Pan Pei-Yu Huang Yi-Ting Sun Chen-Hsu Yu Zhi-Jun Ning Shou-Ling Huang Shing-Jong Huang Richard P. Cheng 《Molecules (Basel, Switzerland)》2022,27(13)
The β-sheet is one of the common protein secondary structures, and the aberrant aggregation of β-sheets is implicated in various neurodegenerative diseases. Cross-strand interactions are an important determinant of β-sheet stability. Accordingly, both diagonal and lateral cross-strand interactions have been studied. Surprisingly, diagonal cross-strand ion-pairing interactions have yet to be investigated. Herein, we present a systematic study on the effects of charged amino acid side-chain length on a diagonal ion-pairing interaction between carboxylate- and ammonium-containing residues in a β-hairpin. To this end, 2D-NMR was used to investigate the conformation of the peptides. The fraction folded population and the folding free energy were derived from the chemical shift data. The fraction folded population for these peptides with potential diagonal ion pairs was mostly lower compared to the corresponding peptide with a potential lateral ion pair. The diagonal ion-pairing interaction energy was derived using double mutant cycle analysis. The Asp2-Dab9 (Asp: one methylene; Dab: two methylenes) interaction was the most stabilizing (−0.79 ± 0.14 kcal/mol), most likely representing an optimal balance between the entropic penalty to enable the ion-pairing interaction and the number of side-chain conformations that can accommodate the interaction. These results should be useful for designing β-sheet containing molecular entities for various applications. 相似文献
992.
Systemic and pulmonary circulations constitute a complex organ that serves multiple important biological functions. Consequently, any pathological processing affecting the vasculature can have profound systemic ramifications. Endothelial and smooth muscle are the two principal cell types composing blood vessels. Critically, endothelial proliferation and migration are central to the formation and expansion of the vasculature both during embryonic development and in adult tissues. Endothelial populations are quite heterogeneous and are both vasculature type- and organ-specific. There are profound molecular, functional, and phenotypic differences between arterial, venular and capillary endothelial cells and endothelial cells in different organs. Given this endothelial cell population diversity, it has been challenging to determine the origin of endothelial cells responsible for the angiogenic expansion of the vasculature. Recent technical advances, such as precise cell fate mapping, time-lapse imaging, genome editing, and single-cell RNA sequencing, have shed new light on the role of venous endothelial cells in angiogenesis under both normal and pathological conditions. Emerging data indicate that venous endothelial cells are unique in their ability to serve as the primary source of endothelial cellular mass during both developmental and pathological angiogenesis. Here, we review recent studies that have improved our understanding of angiogenesis and suggest an updated model of this process.Subject terms: Cell lineage, Chemotaxis 相似文献
993.
994.
Yongqing Cai Tao Xie Huan Yang Dingsong Wu Jianwei Huang Wenshan Hong Lu Cao Chang Liu Cong Li Yu Xu Qiang Gao Taimin Miao Guodong Liu Shiliang Li Li Huang Huiqian Luo Zuyan Xu Hongjun Gao Lin Zhao X.J.Zhou 《中国物理快报》2021,(5):138-143
High resolution angle-resolved photoemission spectroscopy(ARPES) measurements are carried out on CaKFe_4 As_4,KCa_2 Fe_4 As_4 F_2 and(Ba_(0.6)K_(0.4))Fe_2 As_2 superconductors.Clear evidence of band folding between the Brillouin zone center and corners with a(π,π) wave vector has been found from the measured Fermi surface and band structures in all the three kinds of superconductors.A dominant ~(1/2)×~(1/2) surface reconstruction is observed on the cleaved surface of CaKFe_4As_4 by scanning tunneling microscopy(STM) measurements.We propose that the commonly observed ~(1/2)×~(1/2) reconstruction in the FeAs-based superconductors provides a general scenario to understand the origin of the(π,π) band folding.Our observations provide new insights in understanding the electronic structure and superconductivity mechanism in iron-based superconductors. 相似文献
995.
选择腰椎间盘突出症(LDH)患者60例,分为轻度退变组、中度退变组、重度退变组.患者均行MRI检查,比较3组的MRI参数,包括髓核(NP)区、纤维环(AF)区T2值.检测比较发现,3组LDH患者NP区、AF区T2值间存在明显差异,且与腰椎功能评分(JOA)呈正相关,与腰部疼痛评分(VAS)呈负相关(P<0.05).NP... 相似文献
996.
997.
Brain activation has been used to understand brain-level events associated with cognitive tasks or physical tasks. As a quantitative measure for brain activation, we propose entropy in place of signal amplitude and beta value, which are widely used, but sometimes criticized for their limitations and shortcomings as such measures. To investigate the relevance of our proposition, we provided 22 subjects with physical stimuli through elbow extension-flexion motions by using our exoskeleton robot, measured brain activation in terms of entropy, signal amplitude, and beta value; and compared entropy with the other two. The results show that entropy is superior, in that its change appeared in limited, well established, motor areas, while signal amplitude and beta value changes appeared in a widespread fashion, contradicting the modularity theory. Entropy can predict increase in brain activation with task duration, while the other two cannot. When stimuli shifted from the rest state to the task state, entropy exhibited a similar increase as the other two did. Although entropy showed only a part of the phenomenon induced by task strength, it showed superiority by showing a decrease in brain activation that the other two did not show. Moreover, entropy was capable of identifying the physiologically important location. 相似文献
998.
The use of machine learning techniques in computational chemistry has gained significant momentum since large molecular databases are now readily available. Predictions of molecular properties using machine learning have advantages over the traditional quantum mechanics calculations because they can be cheaper computationally without losing the accuracy. We present a new extrapolatable and explainable molecular representation based on bonds, angles and dihedrals that can be used to train machine learning models. The trained models can accurately predict the electronic energy and the free energy of small organic molecules with atom types C, H N and O, with a mean absolute error of 1.2 kcal mol−1. The models can be extrapolated to larger organic molecules with an average error of less than 3.7 kcal mol−1 for 10 or fewer heavy atoms, which represent a chemical space two orders of magnitude larger. The rapid energy predictions of multiple molecules, up to 7 times faster than previous ML models of similar accuracy, has been achieved by sampling geometries around the potential energy surface minima. Therefore, the input geometries do not have to be located precisely on the minima and we show that accurate density functional theory energy predictions can be made from force-field optimised geometries with a mean absolute error 2.5 kcal mol−1.New representations and machine learning calculate DFT minima from force field geometries. 相似文献
999.
Shengying Lin Xiaoyang Wang Roy Wai-Lun Tang Hung Chun Lee Ho Hin Chan Sheyne S. A. Choi Tina Ting-Xia Dong Ka Wing Leung Sarah E. Webb Andrew L. Miller Karl Wah-Keung Tsim 《Molecules (Basel, Switzerland)》2022,27(12)
COVID-19, resulting from infection by the SARS-CoV-2 virus, caused a contagious pandemic. Even with the current vaccines, there is still an urgent need to develop effective pharmacological treatments against this deadly disease. Here, we show that the water and ethanol extracts of the root and rhizome of Polygonum cuspidatum (Polygoni Cuspidati Rhizoma et Radix), a common Chinese herbal medicine, blocked the entry of wild-type and the omicron variant of the SARS-CoV-2 pseudotyped virus into fibroblasts or zebrafish larvae, with IC50 values ranging from 0.015 to 0.04 mg/mL. The extracts were shown to inhibit various aspects of the pseudovirus entry, including the interaction between the spike protein (S-protein) and the angiotensin-converting enzyme II (ACE2) receptor, and the 3CL protease activity. Out of the chemical compounds tested in this report, gallic acid, a phytochemical in P. cuspidatum, was shown to have a significant anti-viral effect. Therefore, this might be responsible, at least in part, for the anti-viral efficacy of the herbal extract. Together, our data suggest that the extracts of P. cuspidatum inhibit the entry of wild-type and the omicron variant of SARS-CoV-2, and so they could be considered as potent treatments against COVID-19. 相似文献
1000.