Bis(dipyridophenazine)copper(II) complex as major groove directing synthetic hydrolase

The copper(II) complex [Cu(dppz)(2)Cl]Cl () has been prepared, structurally characterized and its DNA binding and cleavage properties studied (dppz, dipyridophenazine). Crystal structure of 1xdppzxH(2)O shows the presence of the monocationic copper(II) complex containing two dppz ligands and one chloride in the five coordinate structure. While one bidentate chelating dppz ligand occupies the basal plane, the other dppz ligand shows an axial/equatorial mode of bonding. The chloride ligand binds at the basal plane. The complex crystallizes with dppz and water as lattice molecules. The dppz moieties in the metal-bound and free forms are involved in pi-pi stacking interactions. The one-electron paramagnetic complex shows a visible spectral d-d band at 707 nm in DMF and displays quasireversible cyclic voltammetric response for the Cu(II)/Cu(I) couple near 0.1 V vs. SCE in DMF-0.1 M TBAP. The complex which is an avid binder to calf thymus DNA giving a binding constant (K(b)) value of 2.0 x 10(4) M(-1) in DMF-Tris buffer, cleaves supercoiled pUC19 DNA in an oxidative manner in the presence of mercaptopropionic acid (MPA) as a reducing agent or on photo irradiation at 312 nm. Control experiments show major groove binding and DNA cleavage via the formation of hydroxyl radical in the presence of MPA and by singlet oxygen in the photocleavage reaction. The complex exhibits significant hydrolytic cleavage of DNA in the dark in the absence of any additives at a rate of approximately 3.0 h(-1). The hydrolytic nature of the DNA cleavage is evidenced from the T4 ligase experiments converting the nicked circular form to its original supercoiled form quantitatively. Complex presents a rare example of copper-based major groove directing efficient synthetic hydrolase.     

Synthesis and mechanistic studies on the aquation of selenitoaquobis(diamine)cobalt(III) complexes

Summary The kinetics of the aquation of four selenitoaquobisdiamine)cobalt(III) complexes to their respective diaquabis-(diamine)complexes (diamine=ethylenediamine en, propylenediamine pn, dimethylethylenediamine me₂en and trimethylenediamine tmd) have been carried out conductimetrically in the 25–45 °C range. All reactions exhibit simple first order kinetics, and the rates increase with increasing temperature. In aqueous solution, the complex species exist in equilibrium with their respective hydroxo species, but only the hydroxo species are involved in the aquation process. This result is also reflected in the linear Arrhenius plot. The rates are higher in a 10% alcoholic solution than in water, but then decrease with increase in the alcohol content. A Grunwald-Winstein plot of rates in methanol yields slopes of 0.18 ± 0.04, 0.27±0.03, 0.43±0.03 and 0.34±0.02 for the four amines respectively. A dissociation mechanism is proposed for the aquation of all these complexes.     

A self-dual Yang-Mills hierarchy and its reductions to integrable systems in 1+1 and 2+1 dimensions

The self-dual Yang-Mills equations play a central role in the study of integrable systems. In this paper we develop a formalism for deriving a four dimensional integrable hierarchy of commuting nonlinear flows containing the self-dual Yang-Mills flow as the first member. We show that upon appropriate reduction and suitable choice of gauge group it produces virtually all well known hierarchies of soliton equations in 1+1 and 2+1 dimensions and can be considered as a universal integrable hierarchy. Prototypical examples of reductions to classical soliton equations are presented and related issues such as recursion operators, symmetries, and conservation laws are discussed.     

Synthesis of side chain truncated 3"-aldehyde, 3"-carboxylic acid, and 1"-aldehyde from nodulisporic acid A

An efficient synthesis of the truncated 3"-aldehyde (3) from nodulisporic acid A (1) under mild conditions is described. Further oxidation of 3 to 3"-carboxylic acid (4) and its subsequent oxidative degradation produced 1"-aldehyde (5). These new derivatives are versatile intermediates for the preparation of new, side chain modified derivatives of nodulisporic acid A. [reaction: see text]     

Kinetics and mechanisms of the reactions of thiosulphato-amine complexes of cobalt(III). Part II. Base hydrolysis of the bis(ethylenediamine)thiosulphatocobalt(III) ion

Summary Base hydrolysis of the bis(ethylenediamine)thiosulphatocobalt(III) was investigated spectrophotometrically between 35 and 65 °C and with base concentrations (NaOH) up to 2.0 mol dm^–3. The hydrolysis consists of a one-stage reaction, followed by a slow dechelation step, and then by a fast ligand loss. The reaction is base-dependent. The products of the reaction are an equilibrium mixture ofcis- andtrans-Coen₂ (OH) ₂ ⁺ . Activation parameters for the reaction as determined by the Eyring equation, are H=77.8±4.6 kJ mol^–1 and S=–75±20 JK^–1 mol^–1.     

Metal-assisted red light-induced efficient DNA cleavage by dipyridoquinoxaline-copper(II) complex

Complete cleavage of double stranded pUC19 DNA by the complex [Cu(dpq)2(H2O)](ClO4)2 (dpq, dipyridoquinoxaline) has been observed on irradiation at 694 nm from a pulsed ruby laser, assisted by the metal d-band transition as well as the quinoxaline triplet states in the absence of any external additives.     

The effect of quenched bond disorder on first-order phase transitions

We investigate the effect of quenched bond disorder on the two-dimensional three-color Ashkin–Teller model, which undergoes a first-order phase transition in the absence of impurities. This is one of the simplest and striking models in which quantitative numerical simulations can be carried out to investigate emergent criticality due to disorder rounding of first-order transition. Utilizing extensive cluster Monte Carlo simulations on large lattice sizes of up to 128×128$128\times 128$ spins, each of which is represented by three colors taking values ±1$\pm 1$, we show that the rounding of the first-order phase transition is an emergent criticality. We further calculate the correlation length critical exponent, ν$\nu$, and the magnetization critical exponent, β$\beta$, from finite size scaling analysis. We find that the critical exponents, ν$\nu$ and β$\beta$, change as the strength of disorder or the four-spin coupling varies, and we show that the critical exponents appear not to be in the Ising universality class. We know of no analytical approaches that can explain our non-perturbative results. However our results should inspire further work on this important problem, either numerical or analytical.     

Pulsatile blood flow through arterioles

An analytical study was made to examine the effect of vascular deformability on the pulsatile blood flow in arterioles through the use of a suitable mathematical model. The blood in arterioles is assumed to consist of two layers — both Newtonian but with differing coefficients of viscosity. The flow characteristics of blood as well as the resistance to flow have been determined using the numerical computations of the resulting expressions. The applicability of the model is illustrated using numerical results based on the existing experimental data. r, z coordinate system - u, axial/longitudinal velocity component of blood - p pressure exerted by blood - _b density of blood - µ viscosity of blood - t time - , displacement components of the vessel wall - T _t0,T ₀ known initial stresses - density of the wall material - h thickness of the vessel wall - T _t,T stress components of the vessel - K _l,K _r components of the spring coefficient - C _l,C _r components of the friction coefficient - M _a additional mass of the mechanical model - r ₁ outer radius of the vessel - thickness of the plasma layer - r ₁ inner radius of the vessel - circular frequency of the forced oscillation - k wave number - E ₀,E _t, , _t material parameters for the arterial segment - µ _p viscosity of the plasma layer - Q total flux - Q _p flux across the plasma zone - Q _h flux across the core region - Q mean flow rate - resistance to flow - P pressure difference - l length of the segment of the vessel