An automated instrument for human STR identification: design, characterization, and experimental validation

The microfluidic integration of an entire DNA analysis workflow on a fully integrated miniaturized instrument is reported using lab‐on‐a‐chip automation to perform DNA fingerprinting compatible with CODIS standard relevant to the forensic community. The instrument aims to improve the cost, duration, and ease of use to perform a “sample‐to‐profile” analysis with no need for human intervention. The present publication describes the operation of the three major components of the system: the electronic control components, the microfluidic cartridge and CE microchip, and the optical excitation/detection module. Experimental details are given to characterize the level of performance, stability, reliability, accuracy, and sensitivity of the prototype system. A typical temperature profile from a PCR amplification process and an electropherogram of a commercial size standard (GeneScan 500?, Applied Biosystems) separation are shown to assess the relevance of the instrument to forensic applications. Finally, we present a profile from an automated integrated run where lysed cells from a buccal swab were introduced in the system and no further human intervention was required to complete the analysis.     

Effect of nonlinear strain paths on forming limits under isotropic and anisotropic hardening

The path-dependence of the conventional Forming Limit Diagram (FLD) is an important issue for its applications in industry. Great efforts have been made to understand the nature of the path-dependence with both experimental and theoretical approaches, many of them attempting to find a path-independent way for the application of forming limits. In this paper, we focus on the nonlinear strain path effect on forming limit predictions using both isotropic and anisotropic hardening models. The Forming Limit Diagram (FLD), Forming Limit Stress Diagram (FLSD) and Forming Limit Effective Strain Diagram (epFLD) of sheet metals subject to linear and nonlinear strain paths are analyzed and compared using the Marciniak–Kuczynski approach. An anisotropic hardening model based on Yoshida and Uemori development is adopted in this study, and it is coupled with the traditional Hill’48 yield surface. This model is capable of describing the complex Bauschinger phenomenon after the material undergoes the reverse loading process such as the early re-yielding, work-hardening stagnation and permanent softening. Two different scenarios for the change of strain paths are also investigated. In the first scenario, the sheet material is initially loaded with a fixed strain increment ratio, unloaded to the free stress state, and then reloaded with a different strain increment ratio until the forming limit is reached. In the second scenario, the material does not undergo elastic unloading. Instead, the strain path is abruptly changed to a different strain increment ratio and the material undergoes continuous loading until the forming limit is reached. It is found that the work-hardening behavior after the pre-straining and the loading scenario plays an important role in the path dependent behavior of forming limits. Detailed analysis reveals that the M–K approach may have contributed to the significance of path-dependence observed in this study, especially at high pre-strain levels.     

qNMR for profiling the production of fungal secondary metabolites

Analysis of complex mixtures is a common challenge in natural products research. Quantitative nuclear magnetic resonance spectroscopy offers analysis of complex mixtures at early stages and with benefits that are orthogonal to more common methods of quantitation, including ultraviolet absorption spectroscopy and mass spectrometry. Several experiments were conducted to construct a methodology for use in analysis of extracts of fungal cultures. A broadly applicable method was sought for analysis of both pure and complex samples through use of an externally calibrated method. This method has the benefit of not contaminating valuable samples with the calibrant, and it passed scrutiny for line fitting and reproducibility. The method was implemented to measure the yield of griseofulvin and dechlorogriseofulvin from three fungal isolates. An isolate of Xylaria cubensis (coded MSX48662) was found to biosynthesize griseofulvin in the greatest yield, 149 ± 8 mg per fermentation, and was selected for further supply experiments. Copyright © 2016 John Wiley & Sons, Ltd.     

Axially chiral dicarboxylic acid catalyzed asymmetric semipinacol rearrangement of cyclic β-hydroxy-α-diazo esters

The development of axially chiral dicarboxylic acid catalyzed desymmetrizing asymmetric semipinacol rearrangement of symmetrically substituted six-membered cyclic β-hydroxy-α-diazo esters is reported as a means to give chiral cycloheptanones with good enantioselectivities.     

Identification of phosphorylation sites of equine β‐casein isoforms

Equine β‐casein is phosphorylated at variable degrees and isoforms carrying 3 to 7 phosphate groups (3P–7P) have been found in milk, but the phosphorylated amino acid residues of each isoform are not yet identified. In the present work, the different phosphorylation variants were first isolated by ion‐exchange chromatography and then hydrolysed by trypsin to generate caseinophosphopeptides (CPPs), each containing all the potential phosphorylation sites. The equine CPPs were prepared by metal oxide affinity chromatography, a method based on the affinity of phosphate groups towards titanium dioxide immobilized onto a micro‐column. This method turned out to be an efficient tool to separate the CPPs Arg¹–Lys³⁴ and Glu⁴–Lys³⁴ from non‐phosphorylated peptides. Purification was achieved by reversed‐phase high‐performance liquid chromatography (RP‐HPLC) and each CPP was hydrolyzed by endoproteinase Glu‐C. Finally, the digests were analyzed by RP‐HPLC/electrospray ionization mass spectrometry (RP‐HPLC/ESI‐MS) and identified by nano‐electrospray ionization tandem mass spectrometry (nESI‐MS/MS) to locate the phosphorylated sites of the β‐casein isoforms 4P–7P with accuracy. Thus, the isoform 4P was found to be phosphorylated on residues Ser⁹, Ser²³, Ser²⁴, and Ser²⁵. Addition of phosphate groups on Ser¹⁸, Thr¹², and Ser¹⁰ led to the formation of the isoforms 5P–7P, respectively. The results indicated that the in vivo phosphorylation of the equine β‐casein follows a sequential way and is not randomly performed. Copyright © 2010 John Wiley & Sons, Ltd.     

Synthesis and characterization of 2,8-diazaperylene-1,3,7,9-tetraone, a new anthracene diimide containing six-membered imide rings

A successful synthesis of novel diimides, namely anthracene diimide containing six-membered imide rings, with potential application in organic electronics is reported. The single crystal of 5a exhibits a close interplanar spacing of 3.45 ? between molecules in a stack.