Structure of a de novo designed protein model of radical enzymes

The use of side chains as catalytic cofactors for protein mediated redox chemistry raises significant mechanistic issues as to how these amino acids are activated toward radical chemistry in a controlled manner. De novo protein design has been used to examine the structural basis for the creation and maintenance of a tryptophanyl radical in a three-helix bundle protein maquette. Here we report the detailed structural analysis of the protein by multidimensional NMR methods. An interesting feature of the structure is an apparent pi-cation interaction involving the sole tryptophan and a lysine side chain. Hybrid density functional calculations support the notion that this interaction raises the reduction potential of the W degrees /WH redox pair and helps explain the redox characteristics of the protein. This model protein system therefore provides a powerful model for exploring the structural basis for controlled radical chemistry in protein.     

Trinuclear pyrazine-bridged ruthenium complexes: syntheses, electrochemistry, NIR-Vis spectra, and their interpretation in terms of a 5-orbital-3-parameter model

A study of absorption spectra in the near-infrared (NIR) and visible (vis) regions of trinuclear Ru complexes containing pyrazine (pyz) as bridging ligand, trans-[(Ru(NH(3))(5)pyz)(2)Ru(NH(3))(4)](m+)(m = 6-9), is reported. The spectra were recorded on aqueous solutions containing the described species formed in situ by stoichiometric additions of a standard solution of Ce(SO(4))(2). They were interpreted in terms of a simple 5-orbital-3-parameter model which includes the effects of d-pi interaction and electronic correlation. The model is shown to account for the observed NIR-vis spectra of the complex ions. The 6+ parent species was synthesized by an improved literature method and fully characterized. The novel 8+ complex was also prepared and characterized. The 9+ ion was established to be slowly reduced by water, with dioxygen formation. Electrochemical (CV and DPV) studies were performed on the trinuclear 6+ complex, as well as on its constituent fragments [Ru(NH(3))(5)(pyz)](2+) and trans-[Ru(NH(3))(4)(pyz)(2)](2+).     

Initial evaluation of quantitative performance of chromatographic methods using replicates at multiple concentrations

The introduction of a novel analytical method must be supported by consistent information about its quantitative potentialities; this is critical for whoever considers its utilization for an specific application. Unfortunately, literature abounds in papers proposing excellent chromatographic methods of analysis that have been subjected to comparatively poor quantitative evaluation. The methodology proposed in the present work makes use of some of the performance characteristics whose measurement is recommended in validation protocols; pertinent to this stage of method development are the detection and quantitation limits, the linear range and the repeatability. All this information can be calculated from the results of a calibration with several replicates at each analyte level. Replicates enable the calculation of reproducibility at several analyte levels and the estimation of the linear range; more important, replicates are necessary to detect changes in peak area standard deviation with analyte amount. Regression of calibration data by means of unweighted least-squares (ULSR) can only be performed in those cases in which homoscedasticity has been previously verified; heteroscedastic calibration data demand regression by means of weighted least-squares (WLSR), since ULSR results in gross overestimation of prediction limits at low analyte concentration. The proposal is used for the preliminary quantitative evaluation of a method for the determination of nine biogenic amines by means of pre-column derivatization with dabsyl chloride and separation of derivatives by RPLC. Limits of detection are calculated by a regression approach and by the classical signal-to-noise ratio method (S/N approach). No significant difference was detected for the amines limits of detection estimated by WLSR and by the S/N approach; ULSR estimated limits of detection are between 7 and 78 times larger than those obtained by the other two methods, as a consequence of the heteroscedasticity of calibration data.     

Michael additions of benzoins versus Michael-Stetter additions of aldehydes

Triethylamine catalyzed Michael additions of benzoins to chalcone can prevail over the expected Michael-Stetter additions when certain thiazolium ion conjugate bases - prepared $\text{in situ}$ from the pertinent thiazolium salts and triethylamine- are used as catalysts.     

Acyclic Schiff base salts derived from 1,3‐diaminopropane and 1,3‐diamino‐2‐hydroxypropane

Two salts of acyclic Schiff base cationic ligands, namely N,N′‐bis(2‐nitrobenzyl)propane‐1,3‐diammonium dichloride monohydrate, C₁₇H₂₂N₄O₄²⁺·2Cl⁻·H₂O, (I), and 2‐hydroxy‐N,N′‐bis(2‐nitrobenzyl)propane‐1,3‐diammonium dichloride, C₁₇H₂₂N₄O₅²⁺·2Cl⁻, (II), were synthesized as precursors in order to obtain new acyclic and macrocyclic multidentate ligands and complexes. The cation conformations in compounds (I) and (II) are different in the solid state, although the cations are closely related chemically. Similarly, the hydrogen‐bonding networks involving ammonium cations, hydroxyl groups and chloride anions are also different. In the cation of compound (II), the hydroxyl group is disordered over two sets of sites, with occupancies of 0.785 (8) and 0.215 (8).     

Optimization of Lipid Extraction from Spirulina spp. by Ultrasound Application and Mechanical Stirring Using the Taguchi Method of Experimental Design

The present study uses the Taguchi method of experimental design to optimize lipid extraction from Spirulina spp. by ultrasound application and mechanical stirring. A Taguchi L₉ orthogonal array was used to optimize various parameters, such as methanol: chloroform (M:C) ratio, biomass: solvent ratio, and extraction time for lipid extraction. The results were analyzed using the signal-to-noise (S/N) ratio and analysis of variance (ANOVA). The biomass: solvent ratio significantly influenced lipid content (p < 0.05) with 92.1% and 92.3% contributions to the lipid and S/N ratio data, respectively. The extraction time presented a contribution value of 5.0%, while the M:C ratio presented the most negligible contribution of 0.4% for S/N data. The optimum extraction conditions were: M:C ratio of 1:1, biomass: solvent ratio of 1:60, and extraction time of 30 min. The predominant fatty acids were palmitic acid (44.5%), linoleic acid (14.9%), and gamma-linolenic acid (13.4%). The confirmation experiments indicated a lipid content of 8.7%, within a 95% confidence interval, proving the Taguchi method’s effectiveness in optimizing the process parameters for lipid extraction.     

Flash DSC crystallization study for blown film grade bimodal HDPE resins. I. Isothermal kinetics and its application of the blown film modeling

Isothermal ultra‐cooling crystallization tests were conducted on three blown film grade bimodal HDPE resins using an ultrafast scanning calorimeter, the Flash DSC. Isothermal tests were performed to study the regime transition, the thermal nucleation and the spherulitical growth using the Hoffman‐Lauritzen theory in a range between 90 °C and 116 °C. Temperature profile estimations using such data were in good agreement with actual blown film process data. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 2425–2431     

Black Hole Quasinormal Modes in the Era of LIGO

After a long wait, gravitational wave astronomy has finally begun. Binary black hole mergers are being detected by LIGO and Virgo, and theorists are starting to receive a wealth of data to be analyzed. At this point, we can at long last begin to test alternative theories of gravity and different models of compact objects. One powerful tool to do this is the perturbative analysis of background spacetimes. The objective of this brief review is to introduce the notion and analysis of black hole quasinormal modes, starting from the linear perturbation theory and including a brief discussion of numerical methods and astrophysical implications in the gravitational wave signals recently detected. With these basic ingredients, more sophisticated analyses and applications are possible.     

Advances towards Cell-Specific Gene Transfection: A Small-Molecule Approach Allows Order-of-Magnitude Selectivity

A transfection vector that can home in on tumors is reported. Whereas previous vectors that allow moderately cell selective gene transfection used larger systems, this small-molecule approach paved the way for precise structure-activity relationship optimization. For this, biotin, which mediates cell selectivity, was combined with the potent DNA-binding motif tetralysine-guanidinocarbonypyrrol via a hydrophilic linker, thus enabling SAR-based optimization. The new vector mediated biotin receptor (BR)-selective transfection of cell lines with different BR expression levels. Computer-based analyses of microscopy images revealed a preference of one order of magnitude for the BR-positive cell lines over the BR-negative controls.