Multiplexed DNA sizing by capillary electrophoresis using entangled polymer solutions and diode array detection

We developed a method for the analysis of multiplexed double-stranded DNA (dsDNA) samples complexed to various intercalating dyes using entangled polymer solution. A commercial single-column capillary electrophoresis (CE) instrument with diode array detection was used for multiplexed detection of DNA samples by addition of intercalating fluorescent molecules. A Phi X174HinfI and a pGEM DNA ladder (1 mg/mL) were used for the electrophoretic separation of dsDNA fragments ranging in size from 24 to 726 and 36 to 2645 bp, respectively. The results suggested that simultaneous electrophoretic separation of different DNA ladders multiplexed with different dyes could be performed in the same capillary yielding fast DNA sizing separations. CE analysis, which is often overpowered by slab gel in sample throughput, could now overcome this disadvantage by allowing multiplexed sample analysis in a fraction of the time needed for slab gel analysis. The separation efficiency of stained DNA molecules with both dyes were dramatically improved with buffers containing a large cation such as tetrapentylammonium ion (Npe(4) (+)) as the only cation in the buffer.     

Application of affinity capillary electrophoresis and density functional theory to the investigation of benzo-18-crown-6-ether complex with ammonium cation

Affinity capillary electrophoresis (ACE) and quantum mechanical density functional theory (DFT) calculations have been employed for investigation of non-covalent interactions between macrocyclic ligand, benzo-18-crown-6-ether (B18C6) and ammonium cation, NH₄⁺. Firstly, by means of ACE, the strength of the B18C6-NH₄⁺ complex in mixed binary hydro-organic solvent system, methanol–water (50/50, v/v), was determined from the dependence of effective electrophoretic mobility of B18C6 (corrected to reference temperature 25 °C and constant ionic strength, 10 mM) on the concentration of ammonium ion in the background electrolyte (BGE) using non-linear regression analysis. The logarithmic form of the apparent binding (stability) constant (log K_b) of B18C6-NH₄⁺ complex in the above binary solvent system was found to be equal to log K_b = 1.63 ± 0.10. Secondly, the structural characteristics of B18C6-NH₄⁺ complex were described by quantum mechanical density functional theory (DFT) calculations. According to these calculations, in the energetically most favoured form of the B18C6-NH₄⁺ complex, three strong hydrogen bonds are formed between central ammonium ion and B18C6 ligand, one of them is directed to aryl-O-alkyl (Ar–O–CH₂) ethereal oxygen and the other two hydrogen bonds are oriented to alkyl-O-alkyl (CH₂–O–CH₂) ethereal oxygen atoms of the macrocyclic crown ligand.     

Glass/SU‐8 microchip for electrokinetic applications

In this communication, we describe the fabrication and electric characterization of a hybrid glass/SU‐8 microchannels for high‐performance electrokinetic applications. The bonding process employed SU‐8 film as intermediate layer with reduced baking times; all the procedure took less than 50 min (only about 10 min disregarding the cleaning and dehydration steps). Additionally, further steps to improve the adhesion of the substrate to the SU‐8 were not needed. The developed configuration aggregates the advantages of both substrates, including (i) simple fabrication techniques; (ii) high compatibility for integration of microelectromechanical, optical, and electrochemical components (SU‐8); (iii) high and stable electroosmotic mobility (μ_EO); and (iv) satisfactory heat dissipation capacity (glass). Electroosmotic mobilities were measured as a function of the pH using the current monitoring method, whereas the heat dissipation capacity was investigated through Ohm's law plots for both glass and glass/SU‐8 microchips. The measured μ_EO values were similar for both microdevices, with mobilities of the order of 4.0–4.5 × 10^?4 cm² V^?1 cm^?1 at 4–12 pH range using phosphate buffer (10 and 20 mmol/L). The heat dissipation assays were carried out in microchannels filled with 20 mmol/L phosphate buffer. A considerable Joule heating was observed only at electric field strengths greater than 580 V cm^?1 in hybrid glass/SU‐8 microdevices, representing a substantial increase of 48% when compared to all SU‐8 microdevices.     

Applications of capillary electrophoresis with laser-induced fluorescence for analysis of dGMP–BPDE adduct

DNA adducts are thought to be crucial to the initiation of mutational and carcinogenic processes. Polycyclic aromatic hydrocarbons (PAHs) have been identified as one major source of carcinogenic risk since they can bind to DNA thus forming an adduct. Quantification of this adduct is important because it may correlate to the risk for cancer development. In this study, the adduct formed between 2'-deoxyguanosine 5'-monophosphate and benzo[ a]pyrene-7,8-dihydrodiol-9,10-epoxide (BPDE) was analyzed by capillary electrophoresis. Both capillary zone electrophoresis (CZE) and micellar electrokinetic capillary chromatography (MECC) modes with laser-induced fluorescence detection were used for the separation and analysis of DNA adducts. The exploration of capillary electrophoresis in several modes provided different separation mechanisms in which the stereochemical forms of the adduct could be separated. The best result obtained was using a coated fused-silica capillary in Tris-TAPS buffer, which provided high sensitivity with a detection limit of 2.5x10(-9) mol L(-1). MECC separation of the BPDE adduct, although less sensitive, provided an efficient enantioselective separation option.     

DFT-calculated structure of protonated tetraphenyl <Emphasis Type="Italic">p</Emphasis>-<Emphasis Type="Italic">tert</Emphasis>-butylcalix[4]arene tetraketone

Using DFT calculations, two of the most probable structures (A, B) of the tetraphenyl p-tert-butylcalix[4]arene tetraketone·H₃O⁺ cationic complex species were derived. The hydroxonium ion H₃O⁺, placed in the coordination cavity formed by the calix[4]arene lower-rim groups, is bound by strong hydrogen bonds to the phenoxy oxygen atoms of the calix[4]arene ligand (structures A, B) and also to one carbonyl oxygen (structure B). Correspondence: Emanuel Makrlík, Faculty of Applied Sciences, University of West Bohemia, Pilsen, Czech Republic.     

NMR and theoretical study of the cooperative interaction of hydrated proton with dibenzo-24-crown-8

Interaction of hydrated protons (HPs) with dibenzo-24-crown-8 (DBC in nitrobenzene-d(5) was studied by (1)H and (13)C NMR under assistance of ab initio-density functional theory (DFT) quantum calculations. HPs were afforded by hydrogen bis(1,2-dicarbollyl) cobaltate (HDCC) with 3.5 M excess of H(2)O. The forming of a complex between HP and DBC leads to marked and additive relative shifts of both (1)H and (13)C signals. This was utilized for the estimation of the stabilization constant K of the complex. Its value is at least 10(6) l/mol, which agrees with the result of independent extraction method (log K = 6.3). Using absolute integral intensities of the HP signal in a water-saturated system, it was shown that the form of HP present in the complex must be H(5)O(2)(+), in accord with formerly published structure of the complex in crystalline form. The investigation of the dynamics of exchange between bound and free DBC by transverse relaxation using variably spaced pulses in the Carr-Purcell-Meiboom-Gill (CPMG) sequence or on-resonance rotating-frame relaxation with variable spin-lock field intensity was partly hampered by the fast relaxation of some signals in the complex because of relative immobilization of its internal motions. In order to remove these effects, a pulse sequence dipolar interaction-free transverse relaxation (DIFTRE) for static DIFTRE was devised and the MLEV17 pulse sequence with high intensity of electromagnetic field was used in a separate series of experiments. Using the results of these latter experiments, the correlation time of exchange was established to be about 0.8 ms, which complied with the shape of the spectra. The accompanying ab initio DFT calculations showed that the apparent symmetry of the molecules of both DBC and its complex with H(5)O(2)(+) was probably the result of averaging of energetically close conformations (five for DBC and four for the complex). Both NMR and the calculations show that the basic mode of binding of the ion in the complex is analogous to that found in crystal but the most pronounced conformation is slightly different.     

Liquid‐Free Lithium–Oxygen Batteries

Non‐aqueous lithium–oxygen batteries are considered as most advanced power sources, albeit they are facing numerous challenges concerning almost each cell component. Herein, we diverge from the conventional and traditional liquid‐based non‐aqueous Li–O₂ batteries to a Li–O₂ system based on a solid polymer electrolyte (SPE‐) and operated at a temperature higher than the melting point of the polymer electrolyte, where useful and most applicable conductivity values are easily achieved. The proposed SPE‐based Li‐O₂ cell is compared to Li–O₂ cells based on ethylene glycol dimethyl ether (glyme) through potentiodynamic and galvanostatic studies, showing a higher cell discharge voltage by 80 mV and most significantly, a charge voltage lower by 400 mV. The solid‐state battery demonstrated a comparable discharge‐specific capacity to glyme‐based Li–O₂ cells when discharged at the same current density. The results shown here demonstrate that the safer PEO‐based Li–O₂ battery is highly advantageous and can potentially replace the contingent of liquid‐based cells upon further investigation.     

The use of silica-immobilized brown alga (Pilayella littoralis) for metal preconcentration and determination by inductively coupled plasma optical emission spectrometry

The brown alga Pilayella littoralis was used as a new biosorbent in an on-line metal preconcentration procedure in a flow-injection system. Al, Co, Cu and Fe were determined in lake water samples by inductively coupled plasma optical emission spectrometry (ICP-OES) after preconcentration in a silica-immobilized alga column. Like other algae, P. littoralis exhibited strong affinity for these metals proving to be an effective accumulation medium. Metals were bound at pH 5.5 and were displaced at pH<2 with diluted HCl. The enrichment factors for Cu^II, Fe^III, Al^III and Co^II were 13, 7, 16 and 11, respectively. Metal sorption efficiency ranged from 86 to 90%. The method accuracy was assessed by using drinking water certified reference material and graphite furnace atomic absorption spectrometry (GFAAS) as a comparison technique. The column procedure allowed a less time consuming, easy regeneration of the biomaterial and rigidity of the alga provided by its immobilization on silica gel.     

Stereoarrayed CF3‐Substituted 1,3‐Diols by Dynamic Kinetic Resolution: Ruthenium(II)‐Catalyzed Asymmetric Transfer Hydrogenation

CF₃‐substituted 1,3‐diols were stereoselectively prepared in excellent enantiopurity and high yield from CF₃‐substituted diketones by using an ansa‐ruthenium(II)‐catalyzed asymmetric transfer hydrogenation in formic acid/triethylamine. The intermediate mono‐reduced alcohol was also obtained in very high enantiopurity by applying milder reaction conditions. In particular, CF₃C(O)‐substituted benzofused cyclic ketones underwent either a single or a double dynamic kinetic resolution during their reduction.