Probing the Binding Region of the Single-Stranded DNA-Binding Domain of Rat DNA Polymerase β Using Nanosecond-Pulse Laser-Induced Cross-Linking and Mass Spectrometry

In recent years, there has been a significant number of studies in which UV light has been used as a reagent to induce cross-links in nucleic acid-protein complexes. An area of considerable interest among those interested in structural biology is the garnering of information about the sites of cross-linking within the protein and nucleic acid members of photolinked conjugates, under the assumption that such knowledge should lead to identification of contact regions or sites within the native complexes. In this paper, we present our results from a photocross-linking study of the complex of the single-stranded DNA-binding domain of rat DNA polymerase β (pol β-ss) with the oligonucleotide d(ATATATA). In this study, we have used single nanosecond laser pulses as the cross-linking reagent and matrix-assisted laser desorp-tion/ionization-time of flight mass spectrometry as an analytical tool to identify cross-linked peptides purified from proteolytic digests of the cross-linked complex. Six cross-linked peptides have been identified in tryptic digests of the protein-oligonucleotide conjugates that result from irradiation of the pol β-ss-d(ATATATA) complex with a single laser pulse. Comparisons with NMR data in the literature for the same complex show that each of the cross-linked peptides contains amino acids that are in contact with the nucleic acid component of the complex.     

Isolation,Structure Determination and Synthesis of New Acetylenic Steroids from the Sponge Calyx nicaaensis

Two acetylenic steroids, cholest-5-en-23-yn-3β-ol ( 5 ) and 26,27-dinorcholest-5-en-23-yn-3β-ol ( 3 ), and another unsaturated steroidalcohol, stigmasta-5,23-dien-3β-ol ( 7 ), were isolated from the sponge Calyx nicaaensis. The structures of these two acetylenic steroids were established by synthesis. Several attempts to synthesize the marine steroids alcohol calysterol ( 1 ), with a cyclopropene-containing side chain, starting from cholest-5-en-23-yn-3β-ol are also recorded. Addition of ethyl-diazo-acetate to the triple bond was performed, but the reduction to the methyl derivative yielded decomposition products.     

An investigation of catalytic activity in mixed metal oxide nanophase materials

We present preliminary evidence for catalytic activity by unsupported mixed metal oxide nanocrystalline materials. The results of this study show that a nanophase form of Li-MgO has begun to exhibit catalytic activity by 300 °C. This is at least 200 degrees below the temperature at which conventional Li-MgO catalysts exhibit comparable activity. Furthermore, at higher temperatures, the same nanophase composition shows enhanced activities and somewhat improved hydrocarbon selectivities over conventional Li-MgO catalysts.     

Investigation by infrared absorption of the by-products of the cyanoethylation of cotton cellulose

The soluble cyanoethyl ether of cellulose, prepared by reaction in the presence of NaOH catalyst to high degrees of substitution (DS = 2.95), can be precipitated by various organic media and contains more nitrogen than can be accounted for by simple addition of acrylonitrile at each cellulose hydroxyl group. Infrared absorption spectra of such samples and of the reacted residues show various types of vibrational absorption bands, characteristic of amino groups. At advanced stages of the reaction the characteristic broad unresolved band of cellulose extending from 1200–950 cm.^?1 largely disappears, leaving only a few weaker bands which likely overlap those due to C–N stretching. Comparison is made of the spectra of the partially cyanoethylated cellulose and the polyacrylonitrile which forms in the stock acrylonitrile, to characterize the products. It is inferred that the highly cyanoethylated cellulose, partly dissolved in the acrylonitrile, further degrades and changes under a complex mechanism to various forms of amines. The yellow to orange color of the samples is assumed to be due to these by-products. The thermogravimetric analysis reveals that these products are more heat-resistant than the cyanoethylated cellulose.     

Synthesis of 4,12-dihydro-4-oxoquino-[1,8a,8-a,b]quinoxaline-5-carboxylic acid derivatives

The synthesis and antibacterial activity of 1-substituted amino-2-fluoro-4,12-dihydro-4-oxoquino[1,8a,8-a,b]quinoxaline-5-carboxylic acid derivatives are described. The synthetic route includes a carbon homologation and two intramolecular nucleophilic displacement cyclization reactions leading to the novel 4,12-dihydro-4-oxoquino[1,8a,8-a,b]quinoxaline-5-carboxylic acid heterocycle.     

Sterols with Cyclopropane-Containing Side Chains: Synthesis and Acid Isomerization

To test the eventual involvement of sterols with a cyclopropane containing side chain in bio-methylation processes, 24,25-methanocholest-5-en-3β-ol ( 5 ) and 24,25-methano-26-methylcholest-5-en-3β-ol ( 6 ) were synthesized. Together with the naturally occurring cyclopropane petrosterol ( 1 ), they were submitted to acid isomerization to provide chemical models for some of their potential metabolites.