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排序方式: 共有218条查询结果,搜索用时 15 毫秒
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Carina Lemke Dr. Adéla Jílková Dominic Ferber Dr. Annett Braune Anja On Dr. Patrick Johe Dr. Alena Zíková Prof. Dr. Tanja Schirmeister Dr. Michael Mareš Dr. Martin Horn Prof. Dr. Michael Gütschow 《Chemistry (Weinheim an der Bergstrasse, Germany)》2022,28(62):e202201636
Rhodesain is the major cysteine protease of the protozoan parasite Trypanosoma brucei and a therapeutic target for sleeping sickness, a fatal neglected tropical disease. We designed, synthesized and characterized a bimodal activity-based probe that binds to and inactivates rhodesain. This probe exhibited an irreversible mode of action and extraordinary potency for the target protease with a kinac/Ki value of 37,000 M−1s−1. Two reporter tags, a fluorescent coumarin moiety and a biotin affinity label, were incorporated into the probe and enabled highly sensitive detection of rhodesain in a complex proteome by in-gel fluorescence and on-blot chemiluminescence. Furthermore, the probe was employed for microseparation and quantification of rhodesain and for inhibitor screening using a competition assay. The developed bimodal rhodesain probe represents a new proteomic tool for studying Trypanosoma pathobiochemistry and antitrypanosomal drug discovery. 相似文献
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Bonn B Leandersson C Fontaine F Zamora I 《Rapid communications in mass spectrometry : RCM》2010,24(21):3127-3138
The identification of metabolites is almost exclusively done with liquid chromatography/tandem mass spectrometry (LC/MSMS) and despite the enormous progress in the development of these techniques and software for handling of data this is a time-consuming task. In this study the use of quadrupole time-of-flight (QTOF)-generated MS(E) and MS/MS data were compared with respect to rationalization of metabolites. In addition Mass-MetaSite, a semi-automated software for metabolite identification, was evaluated. The program combines the information from MS raw data, in the form of collision-induced dissociation spectra, with a prediction of the site of metabolism in order to assign the structure of a metabolite. The aim of the software is to mimic the rationalization of fragment ions performed by a biotransformation scientist in the process of structural elucidation. For this evaluation, metabolite identification in human liver microsomes was accomplished for 19 commercially available compounds and 15 in-house compounds. The results were very encouraging and for 96% of the metabolites the same structures were assigned using MS(E) compared with MSMS acquired data. The possibility of using MS(E) could considerably reduce the analysis time. Moreover, Mass-MetaSite performed well and the correct assigned structure, compared to manual inspection of the data, was picked in the first rank in ~80% of the cases. In conclusion MS(E) could be successfully used for metabolite identification in order to reduce time of analysis and Mass-MetaSite could alleviate the work of a biotransformation scientist and decrease the workload by assigning the structure for a majority of the metabolites. 相似文献
56.
María C. Zenobi Carina V. Luengo Marcelo J. Avena Elsa H. Rueda 《Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy》2010,75(4):1283-1288
An ATR-FTIR study of the vibrational spectra of N,N-bis(2-hydroxyethyl) aminomethylphosphonic acid (BHAMP), 1-hydroxyethane-1,1′-diphosphonic acid (HEDP) and nitrilotris(methylenephosphonic acid) (NTMP) adsorbed onto boehmite is presented. The study was performed in the pH range from 5 to 9, and bands assignments are given in the 1200–900 cm?1 wavenumber range, where the bands associated with various P–O(H) vibrations can be found. The three phosphonic acids adsorb onto boehmite by forming inner-sphere surface complexes. ATR-FTIR data indicates the presence of both protonated and deprotonated mononuclear surface species. In all cases, the surface-bound ions undergo protonation reactions as pH is decreased. The results are in good agreement with previously proposed surface complexation models. 相似文献
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Vahlberg C Petoral RM Lindell C Broo K Uvdal K 《Langmuir : the ACS journal of surfaces and colloids》2006,22(17):7260-7264
The affinity of alpha(2A)-adrenergic receptor (alpha(2A)-AR) derived peptide adsorbates for the functional bovine brain G-protein is studied in the search for the minimum sequence recognition. Three short peptides (GPR-i2c, GPR-i3n, and GPR-i3c) are designed to mimic the second and third intracellular loops of the receptor. X-ray photoelectron spectroscopy is used to study the chemical composition of the peptides and the binding strength to the surfaces. Chemisorption of the peptides to the gold substrates is observed. Infrared spectroscopy is used to study the characteristic absorption bands of the peptides. The presence of peptides on the surfaces is verified by prominent amide I and amide II bands. The interaction between the peptides and the G-protein is studied with surface plasmon resonance. It is shown that GPR-i3n has the highest affinity for the G-protein. Equilibrium analysis of the binding shows that the G-protein keeps its native conformation when interacting with GPR-i3c, but during the interaction with GPR-i2c and GPR-i3n the conformation of G-protein is changed, leading to the formation of aggregates and/or multilayers. 相似文献
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In this work, the complexation of cadmium and zinc ions by 3-[N-tris(hydroxymethyl)methylamine]-2-hydroxypropanesulfonic acid (TAPSO), a commercial biological buffer, was evaluated using three electrochemical techniques, at fixed total-ligand and total-metal concentration ratio and varied pH, at 25.0+/-0.1 degrees C and ionic strength set to 0.1M KNO(3). For both metal-ligand systems, complexation was evidenced in the pH range close to deprotonation of the ligand and the final models were optimised after a meticulous graphical analysis. For Cd-(TAPSO)(x)-(OH)(y) system, two complexes, CdL and CdL(2), were identified in the buffering region of the ligand. The proposed final model for this system is: CdL, CdL(2) and CdL(2)(OH) with stability constants, as logbeta, of 2.2, 4.2 and 8.6, respectively. For Zn-(TAPSO)(x)-(OH)(y) system, the complex ZnL is the main species formed in the buffering pH range. The proposed final model is ZnL, ZnL(OH) and ZnL(OH)(2) with overall refined stability constants (as logbeta) to be: 2.5, 7.2 and 13.2, respectively. 相似文献
60.
Nilsson C Nilsson F Turner P Sixtensson M Nordberg Karlsson E Holst O Cohen A Gorton L 《Analytical and bioanalytical chemistry》2006,385(8):1421-1429
In this work, a real-time sampling/analytical method for on-line measurements of two newly discovered cyclomaltodextrinases
(CDases) has been developed and evaluated. This novel methodology not only allows the final products to be investigated, but
it also reveals enzyme-specific differences in the degradation pathways during the hydrolysis of different substrates, which
is a great advantage in the important tasks of investigating the mechanisms of and classifying new hydrolases, and is an advantage
that conventional techniques cannot offer. Two different enzymes, one CDase from Laceyella
sacchari (LsCda13) and one from Anoxybacillus flavithermus (AfCda13), were investigated during the hydrolysis of α-, β- and γ-cyclodextrin, and the hydrolysis products were sampled via
a microdialysis probe and injected on-line every 30 min into a high-performance anion exchange chromatography system equipped
with a pulsed amperometric detector (HPAEC–PAD), where they were identified. The enzymes yielded the same end-products, maltose
and glucose, in an approximate molar ratio of 2:1, but they exhibited distinctly different patterns of intermediate product
formation before reaching the end-point. LsCda13 had a more random distribution of the intermediate products, whereas AfCda13 showed the distinct intermediate production of maltotriose, which in some cases accumulated. 相似文献