Distance distributions and dynamics of a zinc finger peptide from fluorescence resonance energy transfer measurements

Time-resolved fluorescence resonance energy transfer (FRET) measurements were used to measure distance distributions and intramolecular dynamics (site-to-site diffusion) of a 28-residue single-domain zinc finger peptide in the absence and presence of zinc ion. Energy transfer was measured between TRP₁₄ and a N-terminal DNS group. As expected, the TRP-to-DNS distance distribution for zinc-bound peptide is shorter and narrower (R _av=11.2 Å,hw=2.8 Å) than the metal-free peptide (R _av=20.1 Å,hw=14.5 Å). The degree of mutual donor-to-acceptor diffusion (D) was also determined for these distributions. For zinc-bound peptide there is no detectible diffusion (D0.2 Ų/ns), whereas for metal-free peptide a considerable amount of motion is occurring between the donor and the acceptor (D=12 Ų/ns). These results indicate that the zinc-bound peptide folds into a unique, well-defined conformation, whereas the metal-free conformation is flexible and rapidly changing. The absence of detectible mutual site-to-site diffusion between the donor and the acceptor in the metal-bound zinc finger peptide indicates that intramolecular motion is essentially frozen out, on the FRET time scale, as a consequence of zinc coordination.Dedicated to the memory of Barbara D. Wells.     

Evolution of the correlation between orthogonal polarization patterns in broad-area lasers

We measure polarization-resolved instantaneous patterns in a large-aspect ratio quasi-isotropic Nd:YAG laser. High correlation between the instantaneous orthogonal polarization patterns recorded at the earlier stages of the laser pulse has been found due to the strong cross saturation between both polarization modes.     

Fermion condensate model of electroweak interactions

A new dynamical symmetry breaking model of electroweak interactions is proposed based on interacting fermions. Two fermions of different SU_L(2) representations form a symmetry breaking condensate and generate the lepton and quark masses. The weak gauge bosons obtain their usual standard model masses from a gauge-invariant Lagrangian of a doublet scalar field composed of the new fermion fields. The new fermion fields become massive by condensation. It is shown that the new charged fermions are produced at the next linear colliders in large number. The model is a low-energy one, which cannot be renormalized perturbatively. For the parameters of the model, unitarity constraints are presented.     

Growth and characterization of A-plane ZnO and ZnCoO based heterostructures

Non polar ZnO and (Zn, Co)O layers were successfully grown on (11̄02) sapphire (R-plane sapphire). The growth process was shown to directly influence the surface morphology as well as the strain state in (112̄0) ZnO (A-plane ZnO). The dominant defect lines seen in photoluminescence were due to basal stacking faults as demonstrated by means of selective photoluminescence and transmission electron microscopy. We present a novel method for growing high quality A-plane ZnO by inserting a (Zn, Co)O thin buffer layer, which strongly reduced the surface roughness. Finally (Zn, Mg)O/ZnO quantum well structures were grown on such a buffer layer. These quantum wells exhibited no intrinsic quantum confined Stark effect. PACS 81.05.Dz; 81.15.Hi; 78.67.Hc; 68.65.Fg     

Defect branes

We discuss some general properties of “defect branes”, i.e. branes of co-dimension two, in (toroidally compactified) IIA/IIB string theory. In particular, we give a full classification of the supersymmetric defect branes in dimensions 3?D?10 as well as their higher-dimensional string and M-theory origin as branes and a set of “generalized” Kaluza-Klein monopoles. We point out a relation between the generalized Kaluza-Klein monopole solutions and a particular type of mixed-symmetry tensors. These mixed-symmetry tensors can be defined at the linearized level as duals of the supergravity potentials that describe propagating degrees of freedom. It is noted that the number of supersymmetric defect branes is always twice the number of corresponding central charges in the supersymmetry algebra.     

Fragmentation trees for the structural characterisation of metabolites

Metabolite identification plays a crucial role in the interpretation of metabolomics research results. Due to its sensitivity and widespread implementation, a favourite analytical method used in metabolomics is electrospray mass spectrometry. In this paper, we demonstrate our results in attempting to incorporate the potentials of multistage mass spectrometry into the metabolite identification routine. New software tools were developed and implemented which facilitate the analysis of multistage mass spectra and allow for efficient removal of spectral artefacts. The pre-processed fragmentation patterns are saved as fragmentation trees. Fragmentation trees are characteristic of molecular structure. We demonstrate the reproducibility and robustness of the acquisition of such trees on a model compound. The specificity of fragmentation trees allows for distinguishing structural isomers, as shown on a pair of isomeric prostaglandins. This approach to the analysis of the multistage mass spectral characterisation of compounds is an important step towards formulating a generic metabolite identification method. Copyright ? 2012 John Wiley & Sons, Ltd.