Application of Optimal Control Theory to Fourier Transform Ion Cyclotron Resonance

We study the application of Optimal Control Theory to Ion Cyclotron Resonance. We test the validity and the efficiency of this approach for the robust excitation of an ensemble of ions with a wide range of cyclotron frequencies. Optimal analytical solutions are derived in the case without any pulse constraint. A gradient-based numerical optimization algorithm is proposed to take into account limitation in the control intensity. The efficiency of optimal pulses is investigated as a function of control time, maximum amplitude and range of excited frequencies. A comparison with adiabatic and SWIFT pulses is done. On the basis of recent results in Nuclear Magnetic Resonance, this study highlights the potential usefulness of optimal control in Ion Cyclotron Resonance.     

Cutting-edge molecular modelling to unveil new microscopic insights into the guest-controlled flexibility of metal–organic frameworks

Metal–organic frameworks are a class of porous solids that exhibit intriguing flexibility under stimuli, leading often to reversible giant structural changes upon guest adsorption. DUT-49(Cu) and MIL-53(Cr) are fascinating flexible MOFs owing to their guest-induced breathing and negative gas adsorption behaviors respectively. Molecular simulation is one of the most relevant tools to examine these phenomena at the atomistic scale and gain a unique understanding of the physics behind them. Although molecular dynamics and Monte Carlo simulations are widely used in the field of porous materials, these methods hardly consider the structural deformation of a soft material upon guest adsorption. In this work, a cutting-edge osmotic molecular dynamics approach is developed to consider simultaneously the fluid adsorption process and material flexibility. We demonstrate that this newly developed computational strategy offers a unique opportunity to gain unprecedented molecular insights into the flexibility of this class of materials.

Osmotic Molecular Dynamics simulation is developed to consider simultaneously the fluid adsorption and material flexibility to gain molecular insights into the flexibility of MOFs such as DUT-49(Cu) which shows a negative gas adsorption behaviour upon exposure to CH₄.     

Crystallographic and Spectroscopic Evidence for an Intramolecular (OH … π)-Interaction

Crystallographic and spectroscopic evidence for an intramolecular (OH … π)-interaction in anti^9,10-10endo-hydroxy, 10exo-butyltricyclo [4.2.1.1^2.5]deca-3, 7-dien-9-one ( 1 ) is presented.     

High-sensitivity determination of the degradation products of chemical warfare agents by capillary electrophoresis–indirect UV absorbance detection

Capillary electrophoresis coupled with indirect UV absorbance detection was employed for the determination of the chemical warfare agent degradation products: methylphosphonic acid, ethyl methylphosphonate, isopropyl methylphosphonate, and pinacolyl methylphosphonate. Glutamic acid was used as a buffering agent at its isoelectric point (pH 3.22). In its zwitterionic form, glutamic acid does not act as a competing co-anion in the system, thus providing buffering capacity while maintaining high sensitivity. The indirect probe (phenylphosphonic acid) concentration was lowered to 1 mM from the 10 mM in previous literature studies, further enhancing sensitivity. Detection limits of 2 μM were achieved with hydrodynamic injection and up to 100-fold lower using electrokinetic injection. The increased buffering capacity of this system over previous methods led to migration time reproducibility RSD values of 0.18 to 0.22%. This represents a 10-fold improvement in reproducibility over previous studies with comparable or improved sensitivity.     

Structures of tin cluster cations Sn3(+) to Sn15(+)

We employ a combination of ion mobility measurements and an unbiased systematic structure search with density functional theory methods to study structure and energetics of gas phase tin cluster cations, Sn(n)(+), in the range of n = 3-15. For Sn(13)(+) we also carry out trapped ion electron diffraction measurements to ascertain the results obtained by the other procedures. The structures for the smaller systems are most easily described by idealized point group symmetries, although they are all Jahn-Teller distorted: D(3h) (trigonal bipyramid), D(4h) (octahedron), D(5h) (pentagonal bipyramid) for n = 5, 6, and 7. For the larger systems we find capped D(5h) for Sn(8)(+) and Sn(9)(+), D(3h) (tricapped trigonal prism) and D(4d) (bicapped squared antiprism) plus adatoms for n = 10, 11, 14, and 15. A centered icosahedron with a peripheral atom removed is the dominant motif in Sn(12)(+). For Sn(13)(+) the calculations predict a family of virtually isoenergetic isomers, an icosahedron and slightly distorted icosahedra, which are about 0.25 eV below two C(1) structures. The experiments indicate the presence of two structures, one from the I(h) family and a prolate C(1) isomer based on fused deltahedral moieties.     

2-Oxo-9C(3)-hydroxy- und 2-Oxo-9C(7)-hydroxy-bicyclo[3.3.1]nonan

A synthesis of the two C(9) epimers 14 and 15 of 2-oxo-9-hydroxy-bicyclo[3.3.1]nonane is described starting from the two C(2) epimers 3 and 4 of 2-hydroxy-9-oxo-bicyclo[3.3.1]nonane.     

Conformational dependence of hemoglobin reactivity under high viscosity conditions: the role of solvent slaved dynamics

The concept of protein dynamic states is introduced. This concept is based on (i) protein dynamics being organized hierarchically with respect to solvent slaving and (ii) which tier of dynamics is operative over the time window of a given measurement. The protein dynamic state concept is used to analyze the kinetic phases derived from the recombination of carbon monoxide to sol-gel-encapsulated human adult hemoglobin (HbA) and select recombinant mutants. The temperature-dependent measurements are made under very high viscosity conditions obtained by bathing the samples in an excess of glycerol. The results are consistent with a given tier of solvent slaved dynamics becoming operative at a time delay (with respect to the onset of the measurement) that is primarily solvent- and temperature-dependent. However, the functional consequences of the dynamics are protein- and conformation-specific. The kinetic traces from both equilibrium populations and trapped allosteric intermediates show a consistent progression that exposes the role of both conformation and hydration in the control of reactivity. Iron-zinc symmetric hybrid forms of HbA are used to show the dramatic difference between the kinetic patterns for T state alpha and beta subunits. The overall results support a model for allostery in HbA in which the ligand-binding-induced transition from the deoxy T state to the high -affinity R state proceeds through a progression of T state intermediates.     

Cyclopolymerization of amine-linked diacrylate monomers

New diacrylate monomers for cyclopolymerization were synthesized from the reaction of ethyl α-chloromethylacrylate (ECMA) and t-butyl α-bromomethyl acrylate (TBBr) with aniline, adamantyl amine, t-butyl amine, cyanamide, and 4-tetradecyl aniline in yields of ca. 50–70%. Bulk and solution polymerizations with azobisisobutyronitrile (AIBN) at 60–85°C gave soluble cyclopolymers with M_n and M_w ranging from 10,000–30,000 and 12,000–40,000, respectively. The ECMA–cyanamide derivative only gave crosslinked polymers. ¹H and ¹³C solution NMR indicated high cyclization efficiency (>93%). A prototype NLO polymer was synthesized from the reaction of the TBBr–aniline cyclopolymer with tetracyanoethylene. The p-hydroxyaniline derivative of ECMA was synthesized and used for further derivatizations; for example, the benzoate ester was made and polymerized (M_n = 21,260 and M_w = 40,317). The ester groups of the TBBrndash;aniline polymer were hydrolyzed completely to give a polymer with both acid and base moieties. DSC thermograms showed glass transitions of 132°C for the ECMA–aniline derivative, 192°C for the ECMA–adamantyl derivative, 53°C for the TBBr–tetradecylaniline derivative, and 120° for the ECMA–p-benzoylaniline derivative. The ECMA–t-butyl amine polymer showed no obvious T_g. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35 : 2111–2121, 1997     

Nucleophilic Addition to CC Bonds,Part X

A mechanistic model is presented for the base‐catalyzed intramolecular cyclization of polycyclic unsaturated alcohols of type A to ethers D (Scheme 1). The alkoxide anion B is formed first in a fast acid‐base equilibrium. For the subsequent reaction to D , a carbanion‐like transition state C is proposed. This mechanism is in full agreement with our results regarding the influence of substituents on the regioselectivity and the rate of cyclization. We studied the effect of alkyl substituents in allylic position (alkylated endocylic olefinic alcohols 1 – 3 ) and, especially, at the exocyclic double bond ( 12 – 15 ). The fastest cyclization (k_rel=1) is 12 → 16 , which proceeds via a primary carbanion‐like transition state ( E : R¹=R²=H). The corresponding processes 13 → 17 and 14 → 17 are characterized by a less‐stable secondary carbanion‐like transtition state ( E : R¹=Me, R²=H, or vice versa) and are slower by a factor of 10⁴. The slowest reaction (k_rel ca. 10⁻⁶) is the cyclization 15 → 18 via a tertiary carbanion‐like transition state ( E : R¹=R²=Me).