Steering in computational science: Mesoscale modelling and simulation

This paper outlines the benefits of computational steering for high performance computing applications. Lattice-Boltzmann mesoscale fluid simulations of binary and ternary amphiphilic fluids in two and three dimensions are used to illustrate the substantial improvements which computational steering offers in terms of resource efficiency and time to discover new physics. We discuss details of our current steering implementations and describe their future outlook with the advent of computational grids.     

Metallacrowns of Ni(II) with α-aminohydroxamic acids in aqueous solution: beyond a 12-MC-4, an unexpected (vacant?) 15-MC-5

Growing attention has been devoted in the recent years to a class of metallamacrocycles known as metallacrowns (MCs). They are structural analogues of crown ethers where the methylene bridges have been substituted by coordinative bonds formed by a transition metal ion ("ring" metal) and a nitrogen atom. The cavity of the metallacrown can accommodate an additional metal ion ("core" metal) either identical or different from the ring metal, thus forming a homo- or hetero-metallic MC. The most studied ring metal ion is certainly Cu(2+) and the aminohydroxamic acids have proved to be very suitable ligands to form MCs. The behavioural analogies between Cu(2+) and Ni(2+) in forming complexes, along with recent literature data in the solid state, prompted us to investigate the possible MC formation between Ni(2+) and both (S)-α-alaninehydroxamic acid and (S)-valinehydroxamic acid, in aqueous solution. Two metallacrowns, a 12-MC-4 and an unexpected 15-MC-5 have been detected by potentiometry and confirmed by ESI-MS results. Their structures are discussed on the basis of potentiometric, calorimetric, spectroscopic data and DFT calculations. The existence of a vacant 15-MC-5 species in solution can be put forward for the first time, making the present metal/ligand systems very interesting for their potential applications in cation recognition and separation. Finally, the crystal structure of the binary complex K[NiL(2)H(-1)]·5/3 H(2)O of (S)-α-alaninehydroxamic acid (LH) is also reported.     

The complete structure and pro-inflammatory activity of the lipooligosaccharide of the highly epidemic and virulent gram-negative bacterium Burkholderia cenocepacia ET-12 (strain J2315)

Members of genus Burkholderia include opportunistic Gram-negative bacteria that are responsible for serious infections in immunocompromised and cystic fibrosis (CF) patients. The Burkholderia cepacia complex is a group of microorganisms composed of at least nine closely related genomovars. Among these, B. cenocepacia is widely recognized to cause epidemics associated with excessive mortality. Species that belong to this strain are problematic CF pathogens because of their high resistance to antibiotics, which makes respiratory infections difficult to treat and impossible to eradicate. Infection by these bacteria is associated with higher mortality in CF and poor outcomes following lung transplantation. One virulence factor contributing to this is the pro-inflammatory lipopolysaccharide (LPS) molecules. Thus, the knowledge of the lipopolysaccharide structure is an essential prerequisite to the understanding of the molecular mechanisms involved in the inflammatory process. Such data are instrumental in aiding the design of antimicrobial compounds and for developing therapeutic strategies against the inflammatory cascade. In particular, defining the structure of the LPS from B. cenocepacia ET-12 clone LMG 16656 (also known as J2315) is extremely important given the recent completion of the sequencing project at the Sanger Centre using this specific strain. In this paper we address this issue by defining the pro-inflammatory activity of the pure lipopolysaccharide, and by describing its full primary structure. The activity of the lipopolysaccharide was tested as a stimulant in human myelomonocytic U937 cells. The structural analysis was carried out by compositional analysis, mass spectrometry and 2D NMR spectroscopy on the intact lipooligosacchride (LOS) and its fragments, which were obtained by selective chemical degradations.     

Theoretical and experimental research on vibromachines for the transport and handling of material

Summary This paper deals with the various phases into which researches on vibromachines have been articulated over last years in many countries.A synthesis is then given of the theoretical researches carried on at the Institute of Mechanics of Machines of Polytechnic of Milan, setting forth the results obtained and analysing the approaches to the problems of different technical and scientific studies.A comparison is made between a vast series of experimental and theoretical results obtained by the same authors.

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Sommario Questo lavoro tratta delle diverse fasi nelle quali si è articolata la ricerca sulle macchine a vibrazione negli ultimi anni in molti paesi.È poi riportata una sintesi delle ricerche teoriche svolte all'Istituto di Meccanica delle Macchine del Politecnico di Milano presentando i risultati ottenuti e analizzando le impostazioni dei problemi di differenti studi tecnici e scientifici.È svolto un confronto tra una vasta serie di risultati sperimentali e teorici ottenuti dagli autori.

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Research supported by C.N.R. (Consiglio Nazionale delle Ricerche).     

Amperometric Sniffer Based on Electrodes Supported on Ion‐Exchangers for Monitoring the State of Turning Rancid of Lipids

A porous gold electrode supported on one face of an ion‐exchange membrane, acting as a solid polymer electrolyte (SPE), is proposed as an amperometric sniffer for monitoring the aldehyde content in the headspace in equilibrium with lipid samples, in order to gain indication of their state of turning rancid It was used as a detector for a flow injection system in which aldehydes were injected, after preconcentration by solid phase microextraction on a SPME fiber from the gas phase standing above thermostated samples and subsequent desorption by heating. Repeatable (±4.5%) sharp peaks were detected over a wide linear concentration range (0.5–200 ppm). A detection limit of about 0.03 ppm was inferred for a signal‐to‐noise ratio of 3, referred to hexylaldehyde (used as prototype) dissolved in squalene or vegetable oils samples. This approach was applied to the determination of volatile aldehydes from some partially oxidized cereal oils and the results found were compared with both the corresponding peroxide values and their aldehyde content determined by a conventional spectrophotometric method.     

UHPLC-ESI-MS/MS method for direct analysis of drugs of abuse in oral fluid for DUID assessment

An ultra-high-performance liquid chromatography–electrospray ionization–tandem mass spectrometry method for the direct analysis in oral fluid (OF) of several abused drugs and metabolites in a single chromatographic run was set up and validated. Amphetamine, methamphetamine, morphine, O-6-monoacetylmorphine, cocaine, codeine, methylenedioxymethamphetamine (MDMA), methylenedioxyethylamphetamine, methylenedioxyamphetamine, methadone, benzoylecgonine (BEG), Δ9-tetrahydrocannabinol (THC), ketamine, and cocaethylene were determined in a single chromatographic run with no sample pretreatment, after addition of the respective deuterated internal standards. The method was designed to perform a confirmation analysis on the residual OF samples after the preliminary on-site screening test, and it was applied on preservative buffers from different devices (Mavand Rapidstat, Concateno DDS, and Greiner Bio-One) or on neat OF samples. The method was suitable to be applied to the small amounts of sample available for the confirmatory analysis after the preliminary on-site screening or on undiluted OF samples. Limits of detection varied from 5 (morphine) to 0.2 ng/mL (methamphetamine, MDMA, BEG, and cocaethylene). The method was linear for all the substances involved, giving quadratic correlation coefficients of >0.99 in all the different preservative buffers checked. In addition, repeatability and accuracy were satisfactory for the majority of the substances, except for a few cases. The developed method was subsequently applied to 466 residual samples from on-site screening performed by police officers. Of these samples, 74 showed the presence of cocaine and metabolites; THC was detected in 49 samples. Two samples showed codeine and morphine while MDMA was detected in 11 samples and ketamine in four samples.