An ab initio study on the torsional surface of alkanes and its effect on molecular simulations of alkanes and a DPPC bilayer

Energies of 119 conformations of normal alkanes from butane to heptane were calculated at approximately the CCSD(T)/cc-pVQZ level. Energies of gauche (g) conformers relative to trans (t) decrease as chain length increases. In what is termed the "positive pentane effect", adjacent gauche conformers of the same sign are stabilized compared to nonadjacent conformers; e.g., for hexane the energies of tgt, tgg, and gtg are 0.600, 0.930, and 1.18 kcal/mol, respectively. Torsional terms in the CHARMM27 (C27) force field were fit to the calculated QM energies to yield a revised potential, C27r. Molecular dynamics simulations of normal alkanes (heptane, decane, tridecane, and pentadecane) with C27r yield higher populations of gauche states, increased transition rates, and improved agreement with experiment as compared to C27. In addition, C27r simulations of a hydrated DPPC lipid bilayer yield improved agreement with the experimental NMR deuterium order parameters for the aliphatic chain ends.     

The preparation and tin-119m mössbauer spectra of tri-n-butylstannyl esters of heterocyclic and substituted aromatic carboxylic acids

The ^119mSn Mössbauer and infrared data are reported for fifteen tributyltin carboxylates. Although the Mössbauer data at 80 K shows them all to be pentacoordinate polymers, the infrared data indicates that, at room temperature, some of the compounds exist as tetracoordinate monomeric species.     

'Twisted' isophthalamide analogues

Steric interactions in 1,3-dicarboxamidoanthraquinones have been employed to 'twist' isophthalamide-like anion binding sites; the crystal structure of the fluoride complex of a bis-3,5-dichlorophenylamide derivative shows the receptor acting as a 'hydrogen-bonding corner' in a '2 + 2' fluoride containing molecular box.     

A nonadditive methanol force field: bulk liquid and liquid-vapor interfacial properties via molecular dynamics simulations using a fluctuating charge model

We study the bulk and interfacial properties of methanol via molecular dynamics simulations using a CHARMM (Chemistry at HARvard Molecular Mechanics) fluctuating charge force field. We discuss the parametrization of the electrostatic model as part of the ongoing CHARMM development for polarizable protein force fields. The bulk liquid properties are in agreement with available experimental data and competitive with existing fixed-charge and polarizable force fields. The liquid density and vaporization enthalpy are determined to be 0.809 g/cm3 and 8.9 kcal/mol compared to the experimental values of 0.787 g/cm3 and 8.94 kcal/mol, respectively. The liquid structure as indicated by radial distribution functions is in keeping with the most recent neutron diffraction results; the force field shows a slightly more ordered liquid, necessarily arising from the enhanced condensed phase electrostatics (as evidenced by an induced liquid phase dipole moment of 0.7 D), although the average coordination with two neighboring molecules is consistent with the experimental diffraction study as well as with recent density functional molecular dynamics calculations. The predicted surface tension of 19.66+/-1.03 dyn/cm is slightly lower than the experimental value of 22.6 dyn/cm, but still competitive with classical force fields. The interface demonstrates the preferential molecular orientation of molecules as observed via nonlinear optical spectroscopic methods. Finally, via canonical molecular dynamics simulations, we assess the model's ability to reproduce the vapor-liquid equilibrium from 298 to 423 K, the simulation data then used to obtain estimates of the model's critical temperature and density. The model predicts a critical temperature of 470.1 K and critical density of 0.312 g/cm3 compared to the experimental values of 512.65 K and 0.279 g/cm3, respectively. The model underestimates the critical temperature by 8% and overestimates the critical density by 10%, and in this sense is roughly equivalent to the underlying fixed-charge CHARMM22 force field.     

Molecular beam reaction of K atoms with sideways oriented CF3I

Reactive scattering is observed for K + CF₃I → KI+CF₃ where the CF₃I is oriented “sideways” with the I end pointing towards or away from the detector. Angular distributions are extremely broad and completely different from “heads” and “tails” orientations. Maximum signal corresponds to the “towards” orientation although reactivity of the two orientations is equivalent.     

Synthesis of vitamin B6 derivatives I. Preparation of some isopyridoxamine derivatives from isopyridoxal

Improved syntheses of isopyridoxal and isopyridoxamine are described. New 5-N-substituted isopyridoxamine derivatives resulting from condensation followed by reduction of the carbonyl group of isopropylideneisopyridoxal with aniline, 2-aminothiazole and benzylamine are also reported.     

Determination of methylmercury in biological samples by capillary gas chromatography with electron capture detection

A precise and accurate method has been developed for the determination of methylmercury in biological material using capillary gas chromatography with electron-capture detection. Homogenized fish or mussel samples were digested with acid, spiked with ethylmercury chloride as an internal standard and extracted with toluene. After treatment of the solvent extract with sodium thiosulphate and cupric bromide the alkylmercurials were extracted into benzene as their bromide derivatives and analyzed using an OV-275 coated glass capillary column. The detection limit of the method for methylmercury was 5 g/kg tissue.     

Studies of metabolites in diarrheal stool specimens positive for Klebsiella, Serratia, and Proteus spp. by frequency-pulsed electron-capture gas chromatography

Diarrheal stools from infants from which Klebsiella pneumoniae, Serratia liquefaciens, and Proteus mirabilis were isolated as possible causative agents of diarrhea were studied. These stools, along with control stool specimens which were collected from infants in the same village of Tamooh (near Cairo, Egypt), were analyzed by frequency-pulsed electron-capture gas chromatography (FPEC-GC). Watery stools and formed stools, to which distilled water was added, were centrifuged, and the supernatant was extracted with organic solvents and derivatized with specific functional group reagents to form electron-absorbing derivatives of carboxylic acids, hydroxy acids, alcohols, and amines. Results from the study showed distinct differences in FPEC-GC profiles of stools positive for K. pneumoniae, S. liquefaciens, and P. mirabilis. The major differences found were that diarrheal stools from which K. pneumoniae was isolated contained acetoin, a hydroxy acid-labeled peak F, and an unidentified amine, peak A. S. liquefaciens diarrheal stools had FPEC-GC profiles like the controls with the exception that an amine, peak A, was detected. The diarrhel stools containing P. mirabilis produced a distinct amine profile.     

IMDA/retro-Mannich approach to cis-perhydroquinoline Lycopodium alkaloids: asymmetric synthesis of (+)-luciduline

[formula: see text] The first chiral auxiliary mediated asymmetric synthesis of the naturally occurring Lycopodium alkaloid (+)-luciduline has been accomplished. Key steps include an IMDA reaction of a chiral dihydropyridine, a subsequent retro-Mannich ring opening, and a novel cationic reductive cyclization reaction.