Physical complexity of variable length symbolic sequences

A measure called physical complexity is established and calculated for a population of sequences, based on statistical physics, automata theory, and information theory. It is a measure of the quantity of information in an organism’s genome. It is based on Shannon’s entropy, measuring the information in a population evolved in its environment, by using entropy to estimate the randomness in the genome. It is calculated from the difference between the maximal entropy of the population and the actual entropy of the population when in its environment, estimated by counting the number of fixed loci in the sequences of a population. Up until now, physical complexity has only been formulated for populations of sequences with the same length. Here, we investigate an extension to support variable length populations. We then build upon this to construct a measure for the efficiency of information storage, which we later use in understanding clustering within populations. Finally, we investigate our extended physical complexity through simulations, showing it to be consistent with the original.     

The Structural Fate of Individual Multicomponent Metal‐Oxide Nanoparticles in Polymer Nanoreactors

Multicomponent nanoparticles can be synthesized with either homogeneous or phase‐segregated architectures depending on the synthesis conditions and elements incorporated. To understand the parameters that determine their structural fate, multicomponent metal‐oxide nanoparticles consisting of combinations of Co, Ni, and Cu were synthesized by using scanning probe block copolymer lithography and characterized using correlated electron microscopy. These studies revealed that the miscibility, ratio of the metallic components, and the synthesis temperature determine the crystal structure and architecture of the nanoparticles. A Co‐Ni‐O system forms a rock salt structure largely owing to the miscibility of CoO and NiO, while Cu‐Ni‐O, which has large miscibility gaps, forms either homogeneous oxides, heterojunctions, or alloys depending on the annealing temperature and composition. Moreover, a higher‐ordered structure, Co‐Ni‐Cu‐O, was found to follow the behavior of lower ordered systems.     

Synthesis of 4‐Substituted‐ and 1,4‐Disubstituted‐4‐Hydroxypyrrolidin‐2‐ones

This report describes the synthesis of 4‐substituted‐ and 1,4‐disubstituted‐4‐hydroxypyrrolidin‐2‐ones by cyclization of intermediate γ‐aminoesters prepared from alkylbenzylamines, α‐bromoketones, and lithio ethyl acetate.     

Asymmetrical flow field-flow fractionation and excitation-emission matrix spectroscopy combined with parallel factor analyses of riverine dissolved organic matter isolated by tangential flow ultrafiltration

Asymmetrical flow field-flow fractionation (AF4) with sequential on-line UV/visible and fluorescence detectors was used to investigate the composition of dissolved organic matter (DOM) in permeate and retentate fractions isolated by tangential flow ultrafiltration (TFF) at various concentration factors (i.e. ratio of initial volume to the retentate volume; CF). The permeation coefficient model, which defines the log-log relationship between DOM in the permeate fractions and CFs, described the permeation behaviour of DOM with regression coefficients r ² > 0.99. The dominance of higher-molecular weight retentate chromophoric DOM (CDOM) observed in TFF was consistent with the results of AF4. The weight-averaged molecular weights (M _w) of the integral permeate and retentate at CF = 20 were determined to be 1160 and 2320 by AF4, respectively, while their molecular weight distributions (MWD) were centered at 1120 and 1600 Da. M _w, MWD, and aromaticity (i.e. ratio of absorbance at 250 and 365 nm; E2/E3) in permeate fractions were altered significantly during the early stages of TFF (CF < 9). These changes, however, were not evident in excitation-emission matrix fluorescence properties as determined using the parallel factor analysis model. The application of AF4 to TFF fractions suggests that the choice of CF may have an important impact on the size distribution and aromaticity of permeate fractions, whereas fluorescence properties appear insensitive to concentration factor. These results suggest that the choice of CF is crucial only in the study of the permeate fraction where similar CF (i.e. > 9) should be used to obtain meaningful comparison among samples.     

Langmuir Analysis of Nanoparticle Polyvalency in DNA‐Mediated Adsorption

Many nanoparticle adsorption processes are dictated by the collective interactions of surface‐bound ligands. These adsorption processes define how nanoparticles interact with biological systems and enable the assembly of nanoparticle‐based materials and devices. Herein, we present an approach for quantifying nanoparticle adsorption thermodynamics in a manner that satisfies the assumptions of the Langmuir model. Using this approach, we study the DNA‐mediated adsorption of polyvalent anisotropic nanoparticles on surfaces and explore how deviations from model assumptions influence adsorption thermodynamics. Importantly, when combined with a solution‐based van’t Hoff analysis, we find that polyvalency plays a more important role as the individual interactions become weaker. Furthermore, we find that the free energy of anisotropic nanoparticle adsorption is consistent across multiple shapes and sizes of nanoparticles based on the surface area of the interacting facet.     

Dependence of electrical performance on structural organization in polymer field effect transistors

Organic semiconductors (OSCs) are strong contenders for use in printed, flexible electronics. Although organic electronic materials have been studied for many years, the physics of charge transport is still under investigation. This is in part due to variability resulting from the large variety of molecules that can be synthesized and inconsistency in electrical characterization due to device and processing conditions. Molecular ordering in OSCs is known to alter the charge transport characteristics and attention to long range and short range ordering provides clues as to the nature of transport pathways. Here, we study ordered regioregular poly(3‐hexylthiophene‐2,5‐diyl) films carefully prepared to obtain a set of three samples with incrementally increasing order on identical transistor architectures. Ordering was characterized using a variety of short and long range techniques to probe the coherence and number of crystallites formed during processing, and the correlation between these different measures of order are quantified. We observe three changes in transistor behavior that show a shift from non‐ideal to more textbook‐like characteristics with increasing order: reduction of the contact resistance, shift to field‐independent mobility, and a shift from a diode‐like (S‐shaped) to linear response at low lateral fields. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55, 1063–1074     

A polyoxometallate-templated coordination polymer: synthesis and crystal structure of [Cu3(4,4'-bipy)5(MeCN)2]PW12O(40).2C6H5CN

The spherical phosphotungstate ion, PW12O40(3-), has been used as a non-coordinating anionic template for the construction of a novel, three-dimensional Cu(I) coordination polymer.     

Studies in qualitative inorganic analysis. Part XLI

Summary The solubility of mercury(II) sulphide in the various reagents used to separate the copper-tin group has been quantitatively investigated. Our results show that with all reagents the solubility of mercury(II) sulphide is largest when tin(IV) and molybdenum(VI) are present and that the use of hydrogen peroxide with potassium hydroxide ensures that at least 95% of the mercury appears in the copper group.

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Zusammenfassung Die Löslichkeit von Queoksilber(II)-sulfid in den verschiedenen, zur Trennung der Kupfer-Zinn-Gruppe verwendeten Reagenzien wurde quantitativ überprüft. Diese Löslichkeit ist dann in allen Reagenzien am größten, wenn Zinn(IV) und Molybdän(VI) zugegen sind. Die Anwendung von Wasserstoffperoxid und Kalilauge gibt die Gewähr, daß mindestens 95% des Quecksilbers in der Kupfergruppe zu finden sind.

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Part XL: Mikrochim. Acta [Wien] 1970, 83.     

Reduction of RF-induced sample heating with a scroll coil resonator structure for solid-state NMR probes

Heating due to high power 1H decoupling limits the experimental lifetime of protein samples for solid-state NMR (SSNMR). Sample deterioration can be minimized by lowering the experimental salt concentration, temperature or decoupling fields; however, these approaches may compromise biological relevance and/or spectroscopic resolution and sensitivity. The desire to apply sophisticated multiple pulse experiments to proteins therefore motivates the development of probes that utilize the RF power more efficiently to generate a high ratio of magnetic to electric field in the sample. Here a novel scroll coil resonator structure is presented and compared to a traditional solenoid. The scroll coil is demonstrated to be more tolerant of high sample salt concentrations and cause less RF-induced sample heating. With it, the viable experimental lifetime of a microcrystalline ubiquitin sample has been extended by more than an order of magnitude. The higher B1 homogeneity and permissible decoupling fields enhance polarization transfer efficiency in 15N-13C correlation experiments employed for protein chemical shift assignments and structure determination.