RED LIGHT-INDUCED REDUCTION OF A PARTICLE-ASSOCIATED b-TYPE CYTOCHROME FROM CORN IN THE PRESENCE OF METHYLENE BLUE*

Abstract— In the presence of methylene blue, red light causes the reduction of a h-type cytochrome in particulate fractions from corn coleoptiles. Two types of difference spectra for the cytochromes in these fractions are presented: (a) red light-minus-dark in the presence of methylene blue, and (b) dithionite-reduced-minus-oxidized. Comparison of these spectra shows that photoexcited methylene blue selectively reduces a b-type cytochrome which constitutes at most only 30% of the total dithionite-reducible cytochrome present in the most active fractions. The photoreducible cytochrome has an alpha band at room temperature near 557 nm. Bleaching of methylene blue precedes cytochrome reduction under appropriate conditions, suggesting that the photoreduced dye is donating an electron to the cytochrome. This electron transfer does not involve a flavin, at least as judged by the absence of light-induced spectral changes attributable to flavins. Preliminary kinetic studies suggest that EDTA provides the pool of electrons for the reaction. The cytochrome cannot be assigned exclusively either to mitochondria or to endoplasmic reticulum, as judged by its sedimentation properties. These results and the current literature are discussed in the context of the hypothesis that this b-type cytochrome may be involved in the photoreception mechanism for blue and uv light in vivo.     

Computing ionization states of proteins with a detailed charge model

A convenient computational approach for the calculation of the p K_as of ionizable groups in a protein is described. The method uses detailed models of the charges in both the neutral and ionized form of each ionizable group. A full derivation of the theoretical framework is presented, as are details of its implementation in the UHBD program. Application to four proteins whose crystal structures are known shows that the detailed charge model improves agreement with experimentally determined pK_as when a low protein dielectric constant is assumed, relative to the results with a simpler single-site ionization model. It is also found that use of the detailed charge model increases the sensitivity of the computed pK_as to the details of proton placement. © 1996 by John Wiley & Sons, Inc.     

Offset-polygon annulus placement problems

An offset-polygon annulus region is defined in terms of a polygon P and a distance δ > 0 (offset of P). In this paper we solve several containment problems for polygon annulus regions with respect to an input point set. Optimization criteria include both maximizing the number of points contained in a fixed size annulus and minimizing the size of the annulus needed to contain all points. We address the following variants of the problem: placement of an annulus of a convex polygon as well as of a simple polygon; placement by translation only, or by translation and rotation; off-line and on-line versions of the corresponding decision problems; and decision as well as optimization versions of the problems. We present efficient algorithms in each case.     

Dynamics of single InGaN quantum dots

Decay dynamics for single InGaN quantum dots are presented using time-resolved photoluminescence. The recombination is shown to be characterized by a single exponential decay, in contrast to the non-exponential recombination dynamics seen in the 2D wetting layer. The lifetimes of single dots in the temperature range 4–60 K decrease with increasing temperature. Different dots show similar lifetimes of 2 ns.     

Equilibrium model of bimodal distributions of epitaxial island growth

We present a nanostructure diagram for use in designing heteroepitaxial systems of quantum dots. The nanostructure diagram is computed using a new equilibrium statistical physics model and predicts the island size and shape distributions for a range of combinations of growth temperature and amount of deposited material. The model is applied to Ge on Si(001), the archetype for bimodal island growth, and the results compare well with data from atomic force microscopy of Ge/Si islands grown by chemical vapor deposition.     

Synthesis of biologically active amines via rhodium-bisphosphite-catalyzed hydroaminomethylation

[reaction: see text] We report the use of a highly regioselective rhodium-bisphosphite catalyst for olefin hydroaminomethylation. This catalyst system was successfully applied in the synthesis of two biologically active tertiary amines, ibutilide and aripiprazole.     

pi-stacking interactions in cis-Bisfullerene

Experimental, molecular modeling, and model compound studies suggest that favorable fullerene[60] pi-stacking interactions in the ground state and in syn-transition states account for the high cis stereoselectivities observed in the reactions between C(60) and 6, 13-disubstituted pentacenes.     

Optical anisotropy of the SiC((001))- (3x2) surface: evidence for the two-adlayer asymmetric-dimer model

The structure of the ( 3x2) reconstruction of beta-SiC(001) surface has been identified by comparing reflectance anisotropy spectra calculated from first principles with recent measurements. Only the calculations for the two-adlayer asymmetric-dimer model agree with experiment. The two prominent peaks at 3.6 and 5.0 eV found experimentally are assigned to electronic transitions between surface and bulklike electronic states. A further pronounced anisotropy at 2.0 eV, due to transitions between surface states, is predicted.     

Selection rules and isotope effects in the full fragmentation of the hydrogen molecule

Selection rules predicting zeros in cross sections for full fragmentation of the hydrogen molecule into specific momentum configurations are presented. Isotope effects are predicted to arise from these selection rules and from the correlated motion of nuclei and electrons in the final state.