Comparison of formats for the development of fiber-optic biosensors utilizing sol-gel derived materials entrapping fluorescently-labelled protein

The development of fiber-optic biosensors requires that a biorecognition element and a fluorescent reporter group be immobilized at or near the surface of an optical element such as a planar waveguide or optical fiber. In this study, we examined a model biorecognition element-reporter group couple consisting of human serum albumin that was site-selectively labelled at Cys 34 with iodoacetoxy-nitrobenzoxadiazole (HSA-NBD). The labelled protein was encapsulated into sol-gel derived materials that were prepared either as monoliths, as beads that were formed at the distal tip of a fused silica optical fiber, or as thin films that were dipcast along the length of a glass slide or optical fiber. For fiber-based studies, the entrapped protein was excited using a helium-cadmium laser that was launched into a single optical fiber, and emission was separated from the incident radiation using a perforated mirror beam-splitter, and detected using a monochromator-photomultiplier tube assembly. Changes in fluorescence intensity were generated by denaturant-induced conformational changes in the protein or by iodide quenching. The analytical parameters of merit for the different encapsulation formats, including minimum protein loading level, response time and limit-of-detection, were examined, as were factors such as protein accessibility, leaching and photobleaching. Overall, the results indicated that both beads and films were suitable for biosensor development. In both formats, a substantial fraction of the entrapped protein remained accessible, and the entrapped protein retained a large degree of conformational flexibility. Thin films showed the most rapid response times, and provided good detection limits for a model analyte. However, the entrapment of proteins into beads at the distal tip of fibers provided better signal-to-noise and signal-to-background ratios, and required less protein for preparation. Hence, beads appear to be the most viable method for interfacing of proteins to optical fibers.     

Capillary gel electrophoresis of single-stranded DNA fragments with UV detection

Capillary gel electrophoresis has proven to be a powerful tool in biomedical research. We report our investigation of some of the critical parameters affecting separations of single-stranded DNA fragments as monitored by ultraviolet (UV) absorbance detection. Although not as sensitive as laser-induced fluorescence (LIF), UV absorbance detection allows one to calculate quite accurately, and inexpensively, the molarity of each separated DNA fragment and, moreover, the signal “fading” effect normally observed with LIF detection can be, in many cases, substituted for fluorescence to detect the many different single-stranded DNAs, as well as for detection of sequencing reactions.     

Ion permeability through bilayer lipid membranes for biosensor development: control by chemical modification of interfacial regions between phase domains.

Based on the results of studies on cystic fibrosis, which implicated hydroxystearic acid (HSA) as a contributing factor in altered biomembrane function, solvent-free bilayer lipid membranes (BLMs) and monolayer films were prepared from a lipid mixture containing (by mass) 34% phosphatidylcholine, 19% dipalmitoylphosphatidyl serine, 47% cholesterol and variable amounts of 10- and 12-HSA (0-50%). Ion currents, resulting from K+ permeation through BLMs that were supported in 0.1 mol dm-3 KCl solutions buffered to pH 7.4, were monitored with use of a d.c. circuit. The structures of monolayer films at the air-water interface of a Langmuir-Blodgett trough were studied by pressure-area correlations and by further correlation with microscopic phase separation as revealed by fluorescence microscopy. In order to elucidate the role of the hydroxyl moieties in ion permeability, the transmembrane ion current was corrected for the effect of the negative surface charge of the carboxylic acid by replacement of the HSA component with stearic acid. The ion current was found to increase with the molar proportion of the HSAs. Two models for ion conduction through BLMs were considered: 'hopping' via hydrophilic sites within the hydrophobic zone of the BLMs, introduced by the hydroxyl moiety of 10- or 12-HSA; and transport through interfacial regions between phase domains that represent areas of low steric density and low structural order within monolayers. Although the two mechanisms are not distinct, the ion permeability results indicate a change in the response of ion current to HSA concentration at 35 mol-%, suggesting a change in the relative proportion of the mechanisms.(ABSTRACT TRUNCATED AT 250 WORDS)     

Ground vs. excited state electron transfer: adsorbed monolayers and trimers in solution

Transient emission spectroscopy has been used to probe the rate of photoinduced electron transfer between metal centres within a novel trimeric complex [[Os(bpy)2(bpe)2][Os(bpy)2Cl]2]4+, where bpy is 2,2'-bipyridyl and bpe is trans-1,2-bis-(4-pyridyl)ethylene. Transient emission experiments on the trimer, and on [Os(bpy)2 (bpe)2]2+ in which the [Os(bpy)2 Cl]+ quenching moieties are absent, reveal that the rate of photoinduced electron transfer (PET) across the bpe bridge is 1.3 +/- 0.1 x 10(8) s(-1). Investigations into the driving forces for oxidation and reduction of the electronically excited state within the trimer indicate that quenching of the [Os(bpy)2 (bpe)2]2+ centre within the trimer involves electron transfer from the [bpe Os(bpy)2 Cl]+ centres to the electronically excited state with a driving force of -0.3 eV. Monolayers of the complex, [Os(bpy)2 bpe pyridine]2+, have been formed by spontaneous adsorption onto platinum microelectrodes and used to probe the dynamics of electron transfer across the trans-1,2-bis-(4-pyridyl)ethylene bridge in the ground state. These monolayers are stable and exhibit well defined voltammetric responses for the Os2+/3+ redox reaction. Cyclic voltammograms recorded at high scan rates can be accurately modelled according to a non-adiabatic electron transfer model based on the Marcus theory using a standard heterogeneous electron transfer rate constant, k(o), of 3.1 +/- 0.2 x 10(4) s(-1) and a reorganization energy of 0.4 +/- 0.1 eV. This rate constant is a factor of approximately two orders of magnitude smaller than that found for photoinduced electron transfer across the same bpe bridge for identical driving forces. This significant difference is interpreted in terms of both the nature of the orbitals involved in electrochemically and optically driven electron transfer, as well as the strength of electronic coupling between two molecular components as opposed to a molecular component and a metal electrode.     

Heterogeneous kinetics of the dissolution of an inorganic salt, potassium carbonate, in an organic solvent, dimethylformamide

Understanding the mechanisms of solid-liquid systems is fundamental to the development and operation of processes for the production of agrochemicals and pharmaceuticals. The use of a strong inorganic base in an organic solvent, typically, potassium carbonate in dimethylformamide, is often used to facilitate the formation of a required anionic organic nucleophile. In this paper, the dissolution kinetics of potassium carbonate in dimethylformamide at elevated temperatures is studied in the presence of ultrasound, as revealed via monitoring of the deprotonation of 2-cyanophenol by dissolved K2CO3. Two independent experimental methods were employed; the loss of 2-cyanophenol was detected electrochemically at a platinum microdisk working electrode, and the formation of the 2-cyanophenolate anion was monitored via UV/visible spectroscopic analysis. The results were modeled by fitting the experimental data to a theoretical model for the surface-controlled dissolution of solid particles. The dissolution rate constant, k, for the dissolution of K2CO3 in DMF was found to have a value of (1.3 +/- 0.2) x 10(-7) mol cm(-2) s(-1) at 100 degrees C, and the activation energy for the dissolution was 44.2 +/- 0.4 kJ mol(-1) over the temperature range of 70-100 degrees C studied.     

Heterometallic Ln/Hg compounds with fluorinated thiolate ligands

The early lanthanide benzenefluorothiolates (Ln(SC(6)F(5))(3); Ln = La, Ce, Pr, Nd, Sm, Gd) react with Hg(SC(6)F(5))(2) in DME to form ionic heterometallic compounds with Ln cations and Hg anions. X-ray diffraction analyses of all compounds reveal an isostructural series with the general formula [(DME)(3)Ln(SC(6)F(5))(2)](2)[Hg(2)(SC(6)F(5))(6)]. In the structures, a fluorothiolate ligand has been extracted from the Ln coordination sphere that is saturated with three neutral DME donor ligands and a dative interaction between one ortho fluorine and the Ln. Distances between Ln and F do not vary simply with Ln ionic radius. There are two Ln cations with charge balanced by a Hg(2)(SC(6)F(5))(6) dianion composed of two distinctly nonideal Hg(II) tetrahedra, all connected through a series of pi-pi interactions that link cations with anions in a one-dimensional array and anions to anions in a more complex 2D network.     

PHOTOSENSITIZED INHIBITION OF PHOTOSYNTHETIC 14CO2 FIXATION BY α-TERTHIENYL AND ULTRAVIOLET-A*

Abstract: A variety of naturally occurring photosensitizers of plant origin were tested for their ability to cause ultraviolet-A (UVA)-dependent inhibition of photosynthetic ¹⁴CO₂ fixation in leaf disks of Pisum sativum L. At 0.1 mM concentrations and 60 min UVA irradiation, α-terthienyl was strongly inhibitory, harmine and sanguinarine inhibited to a lesser degree, and curcumin, 8-methoxypsoralen and nordihydroguaiaretic acid had no effect under the conditions tested. Alpha-terthienyl + UVA treatments that fully inhibited ¹⁴CO₂ fixation had no effect on fresh weight, chlorophyll or protein content of the tissue. Chloroplast malate dehydrogenase and glyceraldehyde-3-phosphate dehydrogenase were inhibited 45% and 29%, respectively, by α-terthienyl + UVA treatment. Electron transport from H₂O to the reducing side of photosystem I was inhibited to a similar extent, suggesting interference with the reductive activation of chloroplast enzymes. Alpha-terthienyl + UVA-treated tissue exhibited a seven-fold increase in leakage of labeled photosynthate into the external medium. Treated leaf disks showed no ability to recover ¹⁴CO₂ fixing ability over a 24 h period. These results indicate photosensitized damage at the level of the thylakoid membranes resulting in partial loss of electron transport capability and more general damage to chloroplast and cell membranes.     

Protein-Mediated Suppression of Rolling Circle Amplification for Biosensing with an Aptamer-Containing DNA Primer

We report a method to detect proteins via suppression of rolling circle amplification (RCA) by using an appropriate aptamer as the linear primer (denoted as an aptaprimer) to initiate RCA. In the absence of a protein target, the aptaprimer is free to initiate RCA, which can produce long DNA products that are detected via binding of a fluorescent intercalating dye. Introduction of a target causes the primer region within the aptamer to become unavailable for binding to the circular template, inhibiting RCA. Using SYBR Gold or QuantiFluor dyes as fluorescent probes to bind to the RCA reaction product, it is possible to produce a generic protein-modulated RCA assay system that does not require fluorophore- or biotin-modified DNA species, substantially reducing complexity and cost of reagents. Based on this modulation of RCA, we demonstrate the ability to produce both solution and paper-based assays for rapid and quantitative detection of proteins including platelet derived growth factor and thrombin.