Adsorption of multilamellar tubes with a temperature tunable diameter at the air/water interface

The ethanolamine salt of 12-hydroxy stearic acid is known to form tubes having a temperature tunable diameter. Here, we study the behavior of those tubes at the air/water interface by using Neutron Reflectivity. We observed that tubes indeed adsorbed at this interface below a fatty acid monolayer and exhibit the same temperature behavior as in bulk. There is however a peculiar behavior at around 50 °C for which the increase of the diameter of the tubes at the interface yields an unfolding of those tubes into a multilamellar layer. Upon further heating, the tubes re-fold and their diameter re-decreases after which they melt into micelles as observed in the bulk. All structural transitions at the interface are nevertheless reversible. This provides to the system a high interest for its interfacial properties because the structure at the air/water interface can be tuned easily by the temperature.     

Molecular dynamics with helical periodic boundary conditions

Helical symmetry is often encountered in nature and thus also in molecular dynamics (MD) simulations. In many cases, an approximation based on infinite helical periodicity can save a significant amount of computer time. However, standard simulations with the usual periodic boundary conditions (PBC) are not easily compatible with it. In the present study, we propose and investigate an algorithm comprising infinitely propagated helicity, which is compatible with commonly used MD software. The helical twist is introduced as a parametric geometry constraint, and the translational PBC are modified to allow for the helical symmetry via a transitional solvent volume. The algorithm including a parallel code was implemented within the Tinker software. The viability of the helical periodic boundary conditions (HPBC) was verified in test simulations including α‐helical and polyproline II like peptide structures. For an insulin‐based model, the HPBC dynamics made it possible to simulate a fibrillar structure, otherwise not stable within PBC. © 2014 Wiley Periodicals, Inc.     

Spiral patterns in the packing of flexible structures

Spiral patterns are found to be a generic feature in close-packed elastic structures. We describe model experiments of compaction of quasi-1D sheets into quasi-2D containers that allow simultaneous quantitative measurements of mechanical forces and observation of folded configurations. Our theoretical approach shows how the interplay between elasticity and geometry leads to a succession of bifurcations responsible for the emergence of such patterns. Both experimental forces and shapes are also reproduced without any adjustable parameters.     

Enzymatic and microbial biodegradability of poly(ethylene terephthalate) copolymers containing nitrated units

Enzymatic and microbial degradability of poly(ethylene terephthalate) (PET) and PET copolyesters containing 30 mol% of either 5-nitroisophthalic units (PET₇₀NI₃₀) or nitroterephthalic units (PET₇₀NT₃₀) was investigated in laboratory cultures. Two commercial fungal lipases, two bacteria from environmental isolates, and two collection filamentous fungi were tested. The topography of the polymer surface exposed to degradation was characterized by interferometry-confocal microscopy techniques. Biodegradation was estimated by optical and electron microscopy observation, and gel permeation chromatography. Evidence of biodegradation including roughness enhancement, swelling and decrease of the weight-average molecular weight, was only obtained for the case of PET₇₀NT₃₀ cultured with Aspergillus niger. Differences in surface textures were found to be crucial to determine the positive response of this copolyester to biodegradation.     

Viscosities and refractive indices of binary mixtures of 1-butyl-3-methylimidazolium tetrafluoroborate and 1-butyl-2,3-dimethylimidazolium tetrafluoroborate with water at 298 K

Viscosities and refractive indices have been determined for (water + 1-butyl-3-methylimidazolium tetrafluoroborate) and (water + 1-butyl-2,3-dimethylimidazolium tetrafluoroborate) mixtures at 298.15 K, over the whole composition range. The refractive indices were compared with the predictions of the Lorentz–Lorenz, Wiener, and Gladstone–Dale equations. Viscosity deviations (Δη) and refractive index deviations (Δn_D) have been calculated and fitted to the Redlich–Kister polynomial equations. Δn_D are positive whereas Δη are negative over the entire mixture composition for the two salts. The influence of the structure of imidazolium cation on the above physicochemical properties was discussed.     

Conformational control of hydrogen-bonded aromatic bis-ureas

The phenylurea moiety is a ubiquitous synthon in supramolecular chemistry because it contains strong complementary hydrogen bonding groups and is synthetically very accessible. Here we investigate the possibility to strengthen self-association by conformational preorganization of the phenylurea moiety. In fact, we show that it is possible to strongly enhance intermolecular interactions between hydrogen bonded aromatic bis-ureas by substitution at the ortho positions of the phenylurea groups. Ortho substituents enforce a noncoplanar conformation of the urea and phenyl moieties better suited for hydrogen bonding. Substitution by methyl groups is more efficient than with larger groups, probably because of reduced steric hindrance. These effects have been demonstrated in the case of two different supramolecular architectures, which points to the probable generality of the phenomenon. In addition, this study has led to the discovery of a new bis-urea able to form very stable self-assembled nanotubes in toluene up to high temperatures (boiling point) or low concentrations (10(-7) M) and in chloroform down to 3 × 10(-4) M.     

Detection of Circularly Polarized Luminescence of a Cs‐EuIII Complex in Raman Optical Activity Experiments

Circularly polarized luminescence (CPL) spectra are extremely sensitive to molecular structure. However, conventional CPL measurements are difficult and require expensive instrumentation. As an alternative, we explore CPL using Raman scattering and Raman optical activity (ROA) spectroscopy. The cesium tetrakis(3‐heptafluoro‐butylryl‐(+)‐camphorato) europium(III) complex was chosen as a model as it is known to exhibit very large CPL dissymmetry ratio. The fluorescent bands could be discriminated from true Raman signals by comparison of spectra acquired with different laser excitation wavelengths. Furthermore, the ROA technique enables fluorescence identification by measuring the degree of circularity. The CPL dissymmetry ratio was measured as the ROA circular intensity difference of 0.71, the largest one ever reported. The alternative CPL measurement enhances applications of lanthanides in analytical chemistry and chemical imaging of biological objects.     

Black Phosphorus Cytotoxicity Assessments Pitfalls: Advantages and Disadvantages of Metabolic and Morphological Assays

Black phosphorus (BP) belongs to a group of 2D nanomaterials and nowadays attracts constantly increasing attention. Parallel to the growing utilization of BP nanomaterial increase also the requirements for the thorough comprehension of its potential impact on human and animal health. The aim of this study was to compare and discuss five assays commonly used for the cytotoxicity assessments of nanomaterials with a special focus on BP nanoparticles. A comprehensive survey of factors and pitfalls is provided that should be accounted for when assessing their toxicity and pointed to their inconsistency. BP might introduce various levels of interference during toxicity assessments depending on its concentration applied. More importantly, the BP toxicity evaluation was found to be influenced by the nature of assay chosen. These are based on different principles and do not have to assess all the cellular events equally. A commercial assay based on the measurement of protease activity was identified to be the most suitable for the BP toxicity assessment. Further, the benefit of time-lapse quantitative phase imaging for nanomaterial toxicity evaluation was highlighted. Unlike the conventional assessments it provides real-time analysis of the processes accompanying BP administration and enables to understand them deeper and in the context.     

Parallel variable selection of molecular dynamics clusters as a tool for calculation of spectroscopic properties

Clusters of a solute and a few solvent molecules obtained from molecular dynamics (MD) are a powerful tool to study solvation effects by advanced quantum chemical (QC) methods. For spectroscopic properties strongly dependent on the solvation, however, a large number of clusters are needed for a good convergence. In this work, a parallel variable selection (PVS) method is proposed that in some cases efficiently reduces the number of clusters needed for the averaging. The mass, charge, or atomic density MD distributions are used as a secondary variable to preselect the most probable cluster geometries used for averaging of solute spectral properties. When applied to nuclear magnetic resonance chemical shift of a model alcohol, the method allowed one to significantly reduce the total computational time, by a factor of 10. Even larger savings were achieved for the modeling of Raman and Raman optical activity spectra of (S)‐lactamide molecule dissolved in water. The results thus suggest that the PVS method can be generally used for simulations of spectroscopic properties of solvated molecules and makes multiscale MD/QC computations more affordable. © 2012 Wiley Periodicals, Inc.     

Intramolecularly Coordinated Gallium Sulfides: Suitable Single Source Precursors for GaS Thin Films

Our studies have been focused on the synthesis of N→Ga coordinated organogallium sulfides [L¹Ga(μ‐S)]₃ ( 1 ) and [L²Ga(μ‐S)]₂ ( 2 ) containing either N,C,N‐ or C,N‐chelating ligands L¹ or L² (L¹ is {2,6‐(Me₂NCH₂)₂C₆H₃}^? and L² is {2‐(Et₂NCH₂)‐4,6‐tBu₂‐C₆H₂}^?). As the result of the different ligands, compounds 1 and 2 differ mutually in their structure. To change the Ga/S ratio, unusually N→Ga coordinated organogallium tetrasulfide L¹Ga(κ²‐S₄) ( 3 ) was prepared and the unprecedented complex [{2‐[CH{(CH₂)₃CH₃}(μ‐OH)]‐6‐CH₂NMe₂}C₆H₃]GaS ( 4 ) was also isolated as the minor by‐product of the reaction. Compounds 1 – 3 were further studied as potential single‐source precursors for amorphous GaS thin film deposition by spin‐coating.