Supramolecular Arrangement and DFT analysis of Zinc(II) Schiff Bases: An Insight towards the Influence of Compartmental Ligands on Binding Interaction with Protein

We report, for the first time, a detailed crystallographic study of the supramolecular arrangement for a set of zinc(II) Schiff base complexes containing the ligand 2,6-bis((E)-((2-(dimethylamino)ethyl)imino)methyl)-4-R-phenol], where R=methyl/tert-butyl/chloro. The supramolecular study acts as a pre-screening tool for selecting the compartmental ligand R of the Schiff base for effective binding with a targeted protein, bovine serum albumin (BSA). The most stable hexagonal arrangement of the complex [Zn − Me] (R=Me) stabilises the ligand with the highest FMO energy gap (ΔE=4.22 eV) and lowest number of conformations during binding with BSA. In contrast, formation of unstable 3D columnar vertebra for [Zn − Cl] (R=Cl) tend to activate the system with lowest FMO gap (3.75 eV) with highest spontaneity factor in molecular docking. Molecular docking analyses reported in terms of 2D LigPlot+ identified site A, a cleft of domains IB, IIIA and IIIB, as the most probable protein binding site of BSA. Arg144, Glu424, Ser428, Ile455 and Lys114 form the most probable interactions irrespective of the type of compartmental ligands R of the Schiff base whereas Arg185, Glu519, His145, Ile522 act as the differentiating residues with ΔG=−7.3 kcal mol⁻¹.     

Correction to: Effect of Basil antioxidant additive on the performance,combustion and emission characteristics of used cooking oil biodiesel in CI engine

Journal of Thermal Analysis and Calorimetry - The solid–liquid equilibria (SLE) of two binary mixtures of organic stabilizers for energetic materials, viz....     

Photodynamic efficacy of chlorin p6: a pH dependent study in aqueous and lipid environment

Photodynamic efficacy of chlorin p6, a potential candidate of photodynamic therapy (PDT), has been studied at pH 5.0, 6.0 and 7.6 in aqueous and lipid environment. Increased chlorin p6 mediated photodynamic bleaching of N,N-dimethyl-4-nitrosoaniline (RNO), a measure of singlet oxygen yield, was obtained at higher pH. Rate of photodynamic bleaching of RNO was also higher at higher pH and the rate decreased with lowering in pH of irradiated solution. Photodynamic oxidation of tryptophan was also found to be higher at higher pH. Diminished oxidation of RNO was obtained with decrease in pH of irradiated solution. Both, RNO bleaching and tryptophan oxidation was significantly reduced by sodium azide, a known quencher of singlet oxygen. At lower pH, chlorin p6 mediated photodynamic malondialdehyde (MDA) and lipid hydroperoxide formation in egg lecithin liposome was higher. At higher pH chlorin p6 was found to be photodynamically more effective in aqueous environment whereas at lower pH chlorin p6 was photodynamically more effective in hydrophobic environment.     

Surfactant solubilization and the direct encapsulation of interfacially active phenols in mesoporous silicas

The solubilization of phenols in micelles of cetyltrimethyl ammonium bromide leads to microstructural changes from spherical micelles to wormlike micelles and then to vesicles. These microstructures are then used to template silicas. There is a transition from highly ordered hexagonal mesoporous silicas of the M41S family to lamellar structures, as the phenolic dopant concentration is increased. The results have implication to the removal of phenols from aqueous waste streams through the micellar enhanced ultrafiltration process. The entrapment of phenols in mesoporous silicas provides a way to sequester such contaminants in concentrated form.     

Methods developed for SELEX

SELEX (systematic evolution of ligands by exponential enrichment) is a process that involves the progressive purification from a combinatorial library of nucleic acid ligands with a high affinity for a particular target by repeated rounds of partitioning and amplification. With the development of aptamer technology over the last decade, various modified SELEX processes have arisen that allow various aptamers to be developed against a wide variety of molecules, irrespective of the target size. In the present review, the separation methods used in such SELEX processes are reviewed.     

Mathematical Modelling and Computer Simulation of Linear Polymer Degradation: Simple Scissions

Summary: Degradation of a polymer in a reactor by the degrading agent(s) follows a distinct pattern, primarily influenced by structural integrity and reactor environment. This distinct pattern is recorded in the changes in the evolved molecular weight distribution (MWD) or polymer chain length distribution (PCLD) curve characteristics from the initial intact state. Modern size exclusion chromatography (SEC) is the best laboratory‐based method that can clearly provide these plots in the form of chromatogram; however, detailed molecular information is not available. The nature of molecular destruction can be well‐characterised if the distinct MWD shift patterns can be simulated to fingerprint the different chain scission dynamics. This is investigated by our current research using the power of computer simulation techniques to gain insight into the polymer ageing processes. One such technique for studying simple decay processes is presented here, and the results are compared with experimental findings. The concept of a binary tree scission model is introduced to show chain rupture as a sequence of probabilistic events and as a non‐linear function of time. Two new mathematical algorithms, an iterative Monte Carlo structured probability scheme and a semi‐iterative algebraic exact statistical formulation method, are investigated to implement this model and simulate the evolution of resultant temporal MW distribution. The latter, an innovative approach to mathematical modelling, has the potential to generate a statistically perfect instant MWD decay curve. A statistical comparison of the product yield is presented from the data obtained using a wide variety of simulated scission regimes to determine the sources of variability.

Simulated MWD lateral shift for percent cut scission model showing deviation from the initial MWD (red) over degradation time zones T_j(0 ≥ j ≤ 9) with bimodal and curve broadening effect due to accumulation of varied percent cut range 5–30%.     

Probing surface plasmons by bare V-shaped tips: modeling by geometrical optics and rigorous diffraction theory

Optical Review - We consider probing inhomogeneous waves in the near fields of metallic nanostructures with the aid of a dielectric V-shaped wedge connected to a waveguide. A geometrical model...     

Adsorption of gold on hydrogen terminated Si(0 0 1): Formation of chain structure

Possible formation of stable Au atomic wire on the hydrogen terminated Si(0 0 1): 3×1 surface is investigated under the density functional formalism. The hydrogen terminated Si(0 0 1): 3×1 surface is patterned in two different ways by removing selective hydrogen atoms from the surface. The adsorption of Au on such surfaces is studied at different sub-monolayer coverages. At 4/9 monolayer (ML) coverage, zigzag continuous Au chains are found to be stable on the patterned hydrogen terminated Si(0 0 1): 3×1 surface. The reason for the stability of the wire structures at 4/9 ML coverage is explained. It is to be noted that beyond 4/9 ML coverage, the additional Au atoms may introduce clusters on the surface. The continuous atomic gold chains on the substrate may be useful for the fabrication of atomic scale devices.