Comparative molecular field analysis study of stilbene derivatives active against A549 lung carcinoma

A series of 43 stilbene derivatives that showed cytotoxicity against human lung carcinoma (A549) was analyzed using comparative molecular field analysis (CoMFA) for defining the hypothetic pharmacophore model. The polyoxylated stilbenes were found to be active inhibitors of tubulin polymerization. Several cis-stilbenes are structurally similar to combretastatins. However, the trans-stilbenes are assumed to be close to resveratrol found in grapes and have been reported to be potential cancer chemopreventive agents by modulating the initiation, promotion, and progression of the carcinogenic process. With several synthesized compounds that were evaluated for antitumor cytotoxicity against human lung tumor cells (A549), the stilbene derivatives were subjected to CoMFA. To perform systematic molecular modeling of these compounds, a conformational search was carried out based on the precise dihedral angle analysis of the lead compound (1p). The X-ray crystallographic structure of combretastatin A-1 was also used for defining the active conformers of the compounds. After determining the energy-minimized conformers of the lead compound (1p), CoMFA was performed using five different alignments. The three dimensional (3D)-quantitative structure-activity relationship study resulted in reasonable cross-validated, conventional r(2) values equal to 0.640 and 0.958, respectively.     

Excitation-energy migration in self-assembled cyclic zinc(II)-porphyrin arrays: a close mimicry of a natural light-harvesting system

The excitation-energy-hopping (EEH) times within two-dimensional cyclic zinc(II)-porphyrin arrays 5 and 6, which were prepared by intermolecular coordination and ring-closing metathesis reaction of olefins, were deduced by modeling the EEH process based on the anisotropy depolarization as well as the exciton-exciton annihilation dynamics. Assuming the number of energy-hopping sites N = 5 and 6, the two different experimental observables, that is, anisotropy depolarization and exciton-excition annihilation times, consistently give the EEH times of 8.0 +/- 0.5 and 5.3 +/- 0.6 ps through the 1,3-phenylene linkages of 5 and 6, respectively. Accordingly, the self-assembled cyclic porphyrin arrays have proven to be well-defined two-dimensional models for natural light-harvesting complexes.     

Structural and magnetic properties of iron(II) complexes with 1,4,5,8,9,12-hexaazatriphenylene (HAT)

Reactions of Fe(II) salts with the ligand 1,4,5,8,9,12-hexaazatriphenylene (HAT) led to the isolation and characterization of four new compounds: [Fe3(HAT)(H2O)12](SO4)3.3.3H2O (1), [Fe2(HAT)(SO4)(H2O)5](SO4).2H2O.CH3OH (2), [Fe2(HAT)(SO4)(H2O)5](SO4).3H2O (3), and [Fe3Cl5(HAT)(CH3OH)4(H2O)]Cl (4). Compound 1 crystallizes as a trinuclear cluster in which HAT acts as a tris-chelating ligand. Compounds 2 and 3 are two polymorphs of an infinite one-dimensional structure in which the Fe atoms are coordinated to HAT and then connected into the chain through bridging sulfate anions. Compound 4 exhibits a similar chain structure, but with bridging chloride ligands. The magnetic behavior of the new compounds is indicative of weak antiferromagnetic coupling between the Fe(II) centers through the HAT ligand.     

Observable Structures of Small Neutral and Anionic Gold Clusters

Since gold clusters have mostly been studied theoretically by using DFT calculations, more accurate studies are of importance. Thus, small neutral and anionic gold clusters (Au_n and Au_n^?, n=4–7) were investigated by means of coupled cluster with singles, doubles, and perturbative triple excitations [CCSD(T)] calculations with large basis sets, and some differences between DFT and CCSD(T) results are discussed. Interesting isomeric structures that have dangling atoms were obtained. Structures having dangling atoms appear to be stable up to n=4 for neutral gold clusters and up to n=7 for anionic clusters. The relative stabilities and electronic properties of some isomers and major structures are discussed on the basis of the CCSD(T) calculations. This accurate structure prediction of small gold clusters corresponding to experimental photoelectron spectral peaks is valuable in the field of atom‐scale materials science including nanocatalysts.     

Metal‐Ion Metathesis in Metal–Organic Frameworks: A Synthetic Route to New Metal–Organic Frameworks

A porous metal–organic framework, Mn(H₃O)[(Mn₄Cl)₃(hmtt)₈] (POST‐65), was prepared by the reaction of 5,5′,10,10′,15,15′‐hexamethyltruxene‐2,7,12‐tricarboxylic acid (H₃hmtt) with MnCl₂ under solvothermal conditions. POST‐65(Mn) was subjected to post‐synthetic modification with Fe, Co, Ni, and Cu according to an ion‐exchange method that resulted in the formation of three isomorphous frameworks, POST‐65(Co/Ni/Cu), as well as a new framework, POST‐65(Fe). The ion‐exchanged samples could not be prepared by regular solvothermal reactions. The complete exchange of the metal ions and retention of the framework structure were verified by inductively coupled plasma–atomic emission spectrometry (ICP‐AES), powder X‐ray diffraction (PXRD), and Brunauer–Emmett–Teller (BET) surface‐area analysis. Single‐crystal X‐ray diffractions studies revealed a single‐crystal‐to‐single‐crystal (SCSC)‐transformation nature of the ion‐exchange process. Hydrogen‐sorption and magnetization measurements showed metal‐specific properties of POST‐65.     

Thermoanalytical investigations on the solid-state synthesis of Sr-doped praseodymium alkaline-earth cobalt oxides

In this study, the formation and characteristics of Sr-doped praseodymium alkaline-earth cobalt oxide were studied as a function of the strontium content (x). PrBa_1?x Sr _x Co₂O_5+d ceramics with x?=?0.0, 1/16, 1/8, 1/4, and 1/2.5 were prepared by solid-state reaction method from Pr₆O₁₁, BaCO₃, SrCO₃, and Co₃O₄. The solid-state reaction mechanisms were analyzed by differential thermal analysis (DTA) and thermogravimetry (TG) techniques to characterize properly the distinct thermal events occurring during synthesis of layered perovskite-type PrBa_1?x Sr _x Co₂O_5+d oxides. The X-ray diffraction (XRD) results were used to assist the interpretation of DTA?CTG analyses. The TG, DTA, and XRD results for the mixtures showed that the solid-state reaction between precursors was completed in a temperature range between 800 and 1000?°C. The strong influence of strontium contents (x) on the solid-state reaction temperatures and PrBa_1?x Sr _x Co₂O_5+d structure was found.     

Thermal and X-ray diffraction analysis studies during the decomposition of ammonium uranyl nitrate

Two types of ammonium uranyl nitrate (NH₄)₂UO₂(NO₃)₄·2H₂O and NH₄UO₂(NO₃)₃, were thermally decomposed and reduced in a TG-DTA unit in nitrogen, air, and hydrogen atmospheres. Various intermediate phases produced by the thermal decomposition and reduction process were investigated by an X-ray diffraction analysis and a TG/DTA analysis. Both (NH₄)₂UO₂(NO₃)₄·2H₂O and NH₄UO₂(NO₃)₃ decomposed to amorphous UO₃ regardless of the atmosphere used. The amorphous UO₃ from (NH₄)₂UO₂(NO₃)₄·2H₂O was crystallized to γ-UO₃ regardless of the atmosphere used without a change in weight. The amorphous UO₃ obtained from decomposition of NH₄UO₂(NO₃)₃ was crystallized to α-UO₃ under a nitrogen and air atmosphere, and to β-UO₃ under a hydrogen atmosphere without a change in weight. Under each atmosphere, the reaction paths of (NH₄)₂UO₂(NO₃)₄·2H₂O and NH₄UO₂(NO₃)₃ were as follows: under a nitrogen atmosphere: (NH₄)₂UO₂(NO₃)₄·2H₂O → (NH₄)₂UO₂(NO₃)₄·H₂O → (NH₄)₂UO₂(NO₃)₄ → NH₄UO₂(NO₃)₃ → A-UO₃ → γ-UO₃ → U₃O₈, NH₄UO₂(NO₃)₃ → A-UO₃ → α-UO₃ → U₃O₈; under an air atmosphere: (NH₄)₂UO₂(NO₃)₄·2H₂O → (NH₄)₂UO₂(NO₃)₄·H₂O → (NH₄)₂UO₂(NO₃)₄ → NH₄UO₂(NO₃)₃ → A-UO₃ → γ-UO₃ → U₃O₈, NH₄UO₂(NO₃)₃ → A-UO₃ → α-UO₃ → U₃O₈; and under a hydrogen atmosphere: (NH₄)₂UO₂(NO₃)₄·2H₂O → (NH₄)₂UO₂(NO₃)₄·H₂O → (NH₄)₂UO₂(NO₃)₄ → NH₄UO₂(NO₃)₃ → A-UO₃ → γ-UO₃ → α-U₃O₈ → UO₂, NH₄ UO₂(NO₃)₃ → A-UO₃ → β-UO₃ → α-U₃O₈ → UO₂.     

Synthesis of Pure <Emphasis Type="Italic">meso</Emphasis>-2,3-Butanediol from Crude Glycerol Using an Engineered Metabolic Pathway in <Emphasis Type="Italic">Escherichia coli</Emphasis>

meso-2,3-Butanediol (meso-2,3-BDO) is essential for the synthesis of various economically valuable biosynthetic products; however, the production of meso-2,3-BDO from expensive carbon sources is an obstacle for industrial applications. In this study, genes involved in the synthesis of 2,3-BDO in Klebsiella pneumoniae were identified and used to genetically modify Escherichia coli for meso-2,3-BDO production. Two 2,3-BDO biosynthesis genes—budA, encoding acetolactate, and meso-budC, encoding meso-SADH—from K. pneumoniae were cloned into the pUC18 plasmid and introduced into E. coli. In 2 l batch culture, the SGSB03 E. coli strain yielded meso-2,3-BDO at 0.31 g/g_glucose (with a maximum of 15.7 g/l_culture after 48 h) and 0.21 g/g_{crude glycerol} (with a maximum of 6.9 g/l_culture after 48 h). Batch cultures were grown under optimized conditions (aerobic, 6% carbon source, 37 °C, and initial pH 7). To find the optimal culture conditions for meso-2,3-BDO production, we evaluated the enzyme activity of meso-SADH and the whole cell conversion yield (meso-2,3-BDO/acetoin) of the E. coli SGSB02, which contains pSB02. meso-SADH showed high enzyme activity at 30–37 °C and pH 7 (30.5–41.5 U/mg of protein), and the conversion yield of SGSB02 E. coli was highest at 37–42 °C and a pH of 7 (0.25–0.28 g _meso-2,3-BDO/g_acetoin).     

Molecule‐specific determination of atomic polarizabilities with the polarizable atomic multipole model

Recently, many polarizable force fields have been devised to describe induction effects between molecules. In popular polarizable models based on induced dipole moments, atomic polarizabilities are the essential parameters and should be derived carefully. Here, we present a parameterization scheme for atomic polarizabilities using a minimization target function containing both molecular and atomic information. The main idea is to adopt reference data only from quantum chemical calculations, to perform atomic polarizability parameterizations even when relevant experimental data are scarce as in the case of electronically excited molecules. Specifically, our scheme assigns the atomic polarizabilities of any given molecule in such a way that its molecular polarizability tensor is well reproduced. We show that our scheme successfully works for various molecules in mimicking dipole responses not only in ground states but also in valence excited states. The electrostatic potential around a molecule with an externally perturbing nearby charge also exhibits a near‐quantitative agreement with the reference data from quantum chemical calculations. The limitation of the model with isotropic atoms is also discussed to examine the scope of its applicability. © 2012 Wiley Periodicals, Inc.     

Photoionization dynamics in pure helium droplets

The photoionization and photoelectron spectroscopy of pure He droplets were investigated at photon energies between 24.6 eV (the ionization energy of He) and 28.0 eV. Time-of-flight mass spectra and photoelectron images were obtained at a series of molecular beam source temperatures and pressures to assess the effect of droplet size on the photoionization dynamics. At source temperatures below 16 K, where there is significant production of clusters with more than 10(4) atoms, the photoelectron images are dominated by fast electrons produced via direct ionization, with a small contribution from very slow electrons with kinetic energies below 1 meV arising from an indirect mechanism. The fast photoelectrons from the droplets have as much as 0.5 eV more kinetic energy than those from atomic He at the same photon energy. This result is interpreted and simulated within the context of a "dimer model", in which one assumes vertical ionization from two nearest-neighbor He atoms to the attractive region of the He2+ potential energy curve. Possible mechanisms for the slow electrons, which were also seen at energies below IE(He), are discussed, including vibrational autoionizaton of Rydberg states comprising an electron weakly bound to the surface of a large HeN+ core.