Raman spectroscopy of topotecan, an inhibitor of DNA topoisomerase I

Topotecan (TPT), a water-soluble derivative of camptothecin (inhibitor of human DNA topoiomerase I), has found wide application in cancer chemotherapy. The central problem in using topotecan is the presence of lactone rings in its molecules, which undergo hydrolysis at a physiological pH yielding an inactive and even toxic form of the drug. The analysis of Raman spectra of TPT in H₂O and D₂O solutions made it possible to assign the spectral bands to the vibrations of particular molecular groups. Spectral features indicative of the opening of the lactone rings of the TPT molecules, deprotonation of the hydroxyl groups in their quinoline fragments, and of possible participation of the hydroxyl and carbonyl groups in H bonding are found. The data obtained are necessary to study the molecular mechanisms of TPT-DNA interaction and the formation of ternary complexes between TPT, DNA, and DNA topoisomerase I.     

Linear nonstationary optical dimensional resonances in atomic nanostructures

The existence of linear nonstationary optical resonances in a diatomic nanostructural object with a dipole-dipole atomic interaction has been proved. A new solution to the joint system of modified Bloch optical equations and nonlocal field equations is obtained for time intervals much shorter than the times of phase and energy relaxation. Formulas for effective polarizabilities of the object’s atoms, which have a set of dimensional resonances, are derived. The frequencies of these resonances significantly differ from the eigenfrequencies of the object’s atoms, and their properties depend on the interatomic distance, light-pulse duration, initial atomic inversions, and the orientation of the object’s axis relative to the direction of incidence of the external light wave.     

EXPRESSIONS FOR PREDICTING FUNDAMENTAL NATURAL FREQUENCIES OF NON-CYLINDRICAL HELICAL SPRINGS

Numerical and analytical studies are performed for the free vibration analysis of non-cylindrical (conical, barrel and hyperboloidal types) helical springs. The stiffness matrix method is used in the numerical analysis. A total of 12 degrees of freedom (six displacements and six rotations) is described for an element. The exact element stiffness matrix and the exact concentrated element inertia matrix are used in the formulation. The rotary inertia, the shear and extensional deformation effects are considered in the analysis. Comparison of the numerical results with the reported results obtained numerically and experimentally gives satisfactory values. After verification of the numerical frequencies, the non-dimensional fundamental frequencies of fixed-fixed non-cylindrical helical springs with circular section are expressed in a simple formula with a maximum absolute relative error of 5% using those numerical values for the constant helix pitch angles (5°, 10°, and 15°). These expressions restricted to the fundamental frequencies are also verified with ANSYS results.     

Dynamical Characteristics of Traveling Wave Packets of Total Electron Content Disturbances

Using the COPHASE method and the GPS interferometry method for travelling ionospheric disturbances, we analyze in detail the spatio-temporal properties of travelling wave packets (TWP) of total electron content (TEC) disturbances. The analysis is performed on the example of a clearest TWP manifestation observed in California, USA, in October 18, 2001, using the GLOBDET technique, developed at the Institute of Solar-Terrestrial Physics of the Siberian Branch of RAS for global detection and monitoring of natural and technogenic ionospheric disturbances on the basis of TEC variations retrieved from the global network of GPS receivers. In the time domain, TWPs are quasi-periodic TEC oscillations of duration about 1 h, period of 10–20 min, and amplitude exceeding that of the background TEC fluctuations by at least one order of magnitude. The velocity and direction of TWP motion are similar to those of mid-latitude mesoscale travelling ionospheric disturbances, as obtained earlier from the analysis of phase parameters of HF radio signals and the signals of geostationary satellites and discrete space radio sources.     

Towards Treating Correlations in Bose Condensates

 We use the adiabatic hyperspheric expansion and the Faddeev decomposition of the wave function with only s-waves. We derive for a fixed hyperradius an integro-differential equation for the angular eigenvalue and wave function. The correlations lower the interaction energy for N = 20 by about a factor of 5. Received October 22, 2001; accepted for publication November 5, 2001     

Numerical analysis of the spiral Couette flow of a rarefied gas between coaxial cylinders

An implicit quasi-monotone second-order accurate method is proposed for analyzing the spiral Couette flow of a rarefied gas between coaxial cylinders. The basic advantages of the method over the conventional method of stationry iterations are that the former is conservative with respect to the collision integral, has a simple software implementation for any types of boundary conditions, and applies to a wide range of Knudsen numbers.     

Navier-Stokes approximation and problems of the Chapman-Enskog projection for kinetic equations

The purpose of this paper is to investigate problems of the Navier-Stokes approximation to kinetic equations in terms of the so-called Chapman-Enskog projection. One considers properties of the Chapman-Enskog projection for the Cauchy problem for moment approximations of the kinetic equation and primarily the Chapman-Enskog projection for the Boltzmann-Peierls kinetic equation. The existence of the Chapman-Enskog projection for the Cauchy problem is proved for the phase space of conservative variables (phenomena of nonlinear diffusion) and for the phase space of physical variables (the second sound projection). __________ Translated from Trudy Seminara imeni I. G. Petrovskogo, No. 25, pp. 184–225, 2005.     

Semi‐analytical integration of the 8‐node plane element stiffness matrix using symbolic computation

The semi‐analytical integration of an 8‐node plane strain finite element stiffness matrix is presented in this work. The element is assumed to be super‐parametric, having straight sides. Before carrying out the integration, the integral expressions are classified into several groups, thus avoiding duplication of calculations. Symbolic manipulation and integration is used to obtain the basic formulae to evaluate the stiffness matrix. Then, the resulting expressions are postprocessed, optimized, and simplified in order to reduce the computation time. Maple symbolic‐manipulation software was used to generate the closed expressions and to develop the corresponding Fortran code. Comparisons between semi‐analytical integration and numerical integration were made. It was demonstrated that semi‐analytical integration required less CPU time than conventional numerical integration (using Gaussian‐Legendre quadrature) to obtain the stiffness matrix. © 2005 Wiley Periodicals, Inc. Numer Methods Partial Differential Eq, 2006