New strategies for exploring RNA's 2'-OH expose the importance of solvent during group II intron catalysis

The 2'-hydroxyl group contributes inextricably to the functional behavior of many RNA molecules, fulfilling numerous essential chemical roles. To assess how hydroxyl groups impart functional behavior to RNA, we developed a series of experimental strategies using an array of nucleoside analogs. These strategies provide the means to investigate whether a hydroxyl group influences function directly (via hydrogen bonding or metal ion coordination), indirectly (via space-filling capacity, inductive effects, and sugar conformation), or through interactions with solvent. The nucleoside analogs span a broad range of chemical diversity, such that quantitative structure activity relationships (QSAR) now become possible in the exploration of RNA biology. We employed these strategies to investigate the spliced exons reopening (SER) reaction of the group II intron. Our results suggest that the cleavage site 2'-hydroxyl may mediate an interaction with a water molecule.     

Spectrophotometric Determination of Rhenium(IV) with Thiocyanate,TX-100 and N,N′-Diphenylbenzamidine

A spectrophotometric method to determine rhenium(IV) at trace level is based on the extraction of Re(IV)-SCN^? complex in sulphuric acid media with N,N′-diphenylbenzamidine(DPBA) in presence of a non-ionic surfactant triton X-100 (TX-100) in chloroform. The complex shows maximum absorbance at 435 nm with amolar absorptivity value of 4.24 × 10⁴ L mol^?1 cm^?1 at an acidity range 3.5-6.5 M H₂SO₄. The method followed Beer's Law for the system Re(IV)-SCN^?(TX-100)-DPBA upto 4.0 μg Re(IV) mL^?1. The detection limit of the method is 5 ppb. None of the tested foreign ions, except molybdenum(VI), interfere with the determination of rhenium. The interference due to molybdenum could effectively be removed by prior precipitation with oxine. The effect of various analytical parameters on the extraction of the metal are discussed.     

Fe(0)-mediated synthesis of tri- and tetra-substituted olefins from carbonyls: an environmentally friendly alternative to Cr(II)

Fe(0) was investigated as a cost-effective, environmentally friendly alternative to Cr(II) for the olefination of carbonyls by activated polyhalides. In many instances, Fe(0) was equivalent or superior to Cr(II). Notably, Fe(0), but not Cr(II), proved compatible with a wide range of functionality, inter alia, unprotected phenol, aryl nitro, carboxylic acid, and alkyl nitrile. A surprising reversal of stereoselectivity for aldehydes versus ketones was observed using both metals. The resultant alpha-halo-alpha,beta-unsaturated or alpha,beta-unsaturated carboxylic acids, esters, and nitriles are common structural elements in numerous compounds of interest as well as key intermediates in the preparation of other functionality.     

Structural phase transitions in Zn(CN)2 under high pressures

High pressure behavior of zinc cyanide (Zn(CN)₂) has been investigated with the help of synchrotron-based X-ray diffraction measurements. Our studies reveal that under pressure this compound undergoes phase transformations and the structures of the new phases depend on whether the pressure is hydrostatic or not. Under hydrostatic conditions, Zn(CN)₂ transforms from cubic to orthorhombic to cubic-II to amorphous phases. In contrast, the non-hydrostatic pressure conditions drive the ambient cubic phase to a partially disordered crystalline phase, which eventually evolves to a substantially disordered phase. The final disordered phase in the latter case is distinct from the amorphous phase observed under the hydrostatic pressures.     

A new model for spherically symmetric charged compact stars of embedding class 1

In the present study we search for a new stellar model with spherically symmetric matter and a charged distribution in a general relativistic framework. The model represents a compact star of embedding class 1. The solutions obtained here are general in nature, having the following two features: first of all, the metric becomes flat and also the expressions for the pressure, energy density, and electric charge become zero in all the cases if we consider the constant \(A=0\), which shows that our solutions represent the so-called ‘electromagnetic mass model’ [17], and, secondly, the metric function \(\nu (r)\), for the limit n tending to infinity, converts to \(\nu (r)=C{r}^{2}+ ln~B\), which is the same as considered by Maurya et al. [11]. We have investigated several physical aspects of the model and find that all the features are acceptable within the requirements of contemporary theoretical studies and observational evidence.     

A Total Measure of Multi-Particle Quantum Correlations in Atomic Schrödinger Cat States

We propose a total measure of multi-particle quantum correlation in a system of N two-level atoms (N qubits). We construct a parameter that encompasses all possible quantum correlations among N two-level atoms in arbitrary symmetric pure states and define its numerical value to be the total measure of the net atom-atom correlations. We use that parameter to quantify the total quantum correlations in atomic Schrödinger cat states, which are generated by the dispersive interaction in a cavity. We study the variation of the net amount of quantum correlation as we vary the number of atoms from N=2 to N=100 and obtain some interesting results. We also study the variation of the net correlation, for fixed interaction time, as we increase the number of atoms in the excited state of the initial system, and notice some interesting features. We also observe the behaviour of the net quantum correlation as we continuously increase the interaction time, for the general state of N two-level atoms in a dispersive cavity.     

Hopping of chaotic dynamics in a doubly resonant parametric oscillator

We study a doubly resonant optical parametric oscillator where the pump can feed two pairs of signal-idler modes. We assume the presence of gain at the pump frequency. We investigate the various oscillation states of interest, namely, when only the first pair oscillates with the other pair having null amplitudes and vice versa. We demonstrate the exchange of dynamics between the mode pairs when the relevant parameters of the cavity, namely, the phase mismatch factors or the decay rates switch because of fluctuations. The exchange of dynamics is shown to be independent of the nature of dynamics, i.e. independent of whether the motion isn-periodic or chaotic. We also investigate the case where both the pairs can exhibit chaotic dynamics though these states are difficult to realize because of fluctuations.     

Raman scattering study of LiKSO4—phases II and III

Detailed Raman scattering investigation of LiKSO₄ in phases II and III across the transition temperatureT _c ? 700 K is reported. Abrupt change in frequency and line width of the external and internal modes have been observed. Analysis of the results suggests lithium positional disorder and sulphate orientational disorder in the high temperature phase (II). The results also throw some light on the existence of twin domains in the crystal.     

New phase transition in LiKSO4

A subtle first order phase transition in LiKSO₄ has been discovered with the help of a temperature dependent study of the Raman intensity measurements of certain polar modes in different polarization configurations. The room temperature hexagonal C⁶₆ (P6₃) phase transforms to trigonal C⁴_3v (P31c) phase at 201°K while cooling; the reverse transformation (on heating) takes place at 242°K. The phase transition appears to be primarily associated with a cooperative reorientation of SO₄ tetrahedra in the crystal.