Folding, conformational changes, and dynamics of cytochromes C probed by NMR spectroscopy

NMR spectroscopy has become a vital tool for studies of protein conformational changes and dynamics. Oxidized Fe(III)cytochromes c are a particularly attractive target for NMR analysis because their paramagnetism (S = (1)/(2)) leads to high (1)H chemical shift dispersion, even for unfolded or otherwise disordered states. In addition, analysis of shifts induced by the hyperfine interaction reveals details of the structure of the heme and its ligands for native and nonnative protein conformational states. The use of NMR spectroscopy to investigate the folding and dynamics of paramagnetic cytochromes c is reviewed here. Studies of nonnative conformations formed by denaturation and by anomalous in vivo maturation (heme attachment) are facilitated by the paramagnetic, low-spin nature of native and nonnative forms of cytochromes c. Investigation of the dynamics of folded cytochromes c also are aided by their paramagnetism. As an example of this analysis, the expression in Escherichia coli of cytochrome c(552) from Nitrosomonas europaea is reported here, along with analysis of its unusual heme hyperfine shifts. The results are suggestive of heme axial methionine fluxion in N. europaea ferricytochrome c(552). The application of NMR spectroscopy to investigate paramagnetic cytochrome c folding and dynamics has advanced our understanding of the structure and dynamics of both native and nonnative states of heme proteins.     

Synthesis of ferrites: Thermal analysis of some transition metal tris(maleato)ferrates(III)

Thermal analysis of some transition metal ferrimaleate precursors, M₃[Fe(mal)₃]₂·xH₂O (M=Mn, Co, Ni, Cu) has been studied in static air atmosphere from ambient to 600°C. Various physico-chemical techniques, i.e. TG, DTG, DTA, XRD, IR, Mössbauer spectrometry, have been employed to characterize both the intermediates and final products. After dehydration the anhydrous precursors undergo decomposition to yield an iron(II) intermediate, M[Fe^II(mal)₂] (M=Mn, Co, Ni, Cu) in the temperature range 160-275°C. A subsequent oxidative decomposition of iron(II) species leads to the formation of -Fe₂O₃ and MO in the successive stages. Finally a solid-state reaction occurs between the oxides above 400°C resulting in the formation of transition metal ferrites, MFe₂O₄. The ferrites have been obtained at much lower temperature and in less time than in the conventional ceramic method.This revised version was published online in November 2005 with corrections to the Cover Date.     

Synthesis of Polylactide: Effect of Dispersion of the Initiator

The ring opening polymerization of L-lactide was studied in bulk using stannous octoate as initiator. In some experiments, triphenylphosphine, a Lewis base was also used as co-initiator. The polymerization was carried out at 130°C up to 29 h. The monomer was used after recrystallizing three times with dry toluene. Experiments were carried out using a wide range of monomer to initiator ratio. The averages and distributions of molar masses of resulting PLA have been determined by means of size exclusion chromatography, SEC. It is shown that the (mode, process) procedure of dispersion of the catalyst in polymerization system affects the molar mass distribution of the product as is evidenced by the bimodality or even trimodality observed in the SEC chromatograms.     

Dansyl-anthracene dyads for ratiometric fluorescence recognition of Cu2+

Dansyl-anthracene dyads 1 and 2 in CH(3)CN-H(2)O (7:3) selectively recognize Cu(2+) ions amongst alkali, alkaline earth and other heavy metal ions using both absorbance and fluorescence spectroscopy. In absorbance, the addition of Cu(2+) to the solution of dyads 1 or 2 results in appearance of broad absorption band from 200 nm to 725 nm for dyad 1 and from 200 nm to 520 nm for dyad 2. This is associated with color change from colorless to blue (for 1) and fluorescent green (for 2). This bathochromic shift of the spectrum could be assigned to internal charge transfer from sulfonamide nitrogen to anthracene moiety. In fluorescence, under similar conditions dyads 1 and 2 on addition of Cu(2+) selectively quench fluorescence due to dansyl moiety between 520-570 nm (for 1)/555-650 nm (for 2) with simultaneous fluorescence enhancement at 470 nm and 505 nm for dyads 1 and 2, respectively. Hence these dyads provide opportunity for ratiometric analysis of 1-50 μM Cu(2+). The other metal ions viz. Fe(3+), Co(2+), Ni(2+), Cd(2+), Zn(2+), Hg(2+), Ag(+), Pb(2+), Li(+), Na(+), K(+), Mg(2+), Ca(2+), Ba(2+) do not interfere in the estimation of Cu(2+) except Cr(3+) in case of dyad 1. The coordination of dimethylamino group of dansyl unit with Cu(2+) causes quenching of fluorescence due to dansyl moiety between 520-600 nm and also restricts the photoinduced electron transfer from dimethylamino to anthracene moiety to release fluorescence between 450-510 nm. This simultaneous quenching and release of fluorescence respectively due to dansyl and anthracene moieties emulates into Cu(2+) induced ratiometric change.     

The effect of length of single‐walled carbon nanotubes (SWNTs) on electrical properties of conducting polymer–SWNT composites

DC conductivity of conjugated polymer‐single‐walled carbon nanotube (SWNT) composite films has been measured for different SWNT concentrations. The composite was prepared by dispersing SWNTs in the poly (3‐octylthiophene), P3OT matrix already dissolved in xylene. The conductivity of the composite films showed a rapid increase as the SWNT concentration increases beyond a certain value. This behavior is explained in terms of percolating paths provided by the SWNTs in the volume of polymer matrix. To investigate the effect of length of nanotubes on the percolation conductivity, different SWNT samples were employed with similar diameter but varying tube lengths. It was found that the conductivity of the composite films is strongly dominated by the length of the nanotubes. Lower percolation limit and high conductivity value of composite films is observed for longer nanotubes. Furthermore, the conductivity is observed to be dependent on the size of the host polymer molecule also. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 89–95, 2010     

Morphology of heavy ions irradiated mica

The samples of natural mica (muscovite and biotite) were irradiated with energetic heavy ions [¹³⁶Xe (11.56 MeV/n) and ¹⁹⁷Au (11.40 MeV/n)] from universal linear accelerator (UNILAC) GSI, Darmstadt, Germany. The simple track etch technique has been used to develop and analyze the morphology of induced heavy ions and natural alpha recoil tracks with the help of atomic force microscopy. Defective structure and lattice disorder have been observed in the environs of the etch pits in these layered crystalline materials. The distribution of defects produced along the tracks, geometrical analysis of tracks shapes and shallowness and their correlations with the structural arrangement of the materials have been discussed in the present investigation. Importance of different ion track geometries in micaceous minerals for the fabrication of nanoterrace material with different stacks having sharp edges with unique properties has been elaborated in the present paper.     

Effect of Additives on the Activity of Tannase from <Emphasis Type="Italic">Aspergillus awamori</Emphasis> MTCC9299

Tannase from Aspergillus awamori MTCC 9299 was purified using ammonium sulfate precipitation followed by ion-exchange chromatography. A purification fold of 19.5 with 13.5% yield was obtained. Temperature of 30 °C and pH of 5.5 were found optimum for tannase activity. The effects of metals and organic solvents on the activity of tannase were also studied. Metal ions Mg⁺², Mn⁺², Ca⁺², Na⁺, and K ⁺ stimulated the tannase activity, while Cu⁺², Fe⁺³, and Co⁺² acted as inhibitors of the enzyme. The addition of organic solvents like acetic acid, isoamylalcohol, chloroform, isopropyl alcohol, and ethanol completely inhibited the enzyme activity. However, butanol and benzene increased the enzyme activity.     

Cell Disruption Optimization and Covalent Immobilization of β-D-Galactosidase from <Emphasis Type="Italic">Kluyveromyces marxianus</Emphasis> YW-1 for Lactose Hydrolysis in Milk

β-D-galactosidase (EC 3.2.1.23) from Kluyveromyces marxianus YW-1, an isolate from whey, has been studied in terms of cell disruption to liberate the useful enzyme. The enzyme produced in a bioreactor on a wheat bran medium has been successfully immobilized with a view to developing a commercially usable technology for lactose hydrolysis in the food industry. Three chemical and three physical methods of cell disruption were tested and a method of grinding with river sand was found to give highest enzyme activity (720 U). The enzyme was covalently immobilized on gelatin. Immobilized enzyme had optimum pH and temperature of 7.0 and 40 °C, respectively and was found to give 49% hydrolysis of lactose in milk after 4 h of incubation. The immobilized enzyme was used for eight hydrolysis batches without appreciable loss in activity. The retention of high catalytic activity compared with the losses experienced with several previously reported immobilized versions of the enzyme is significant. The method of immobilization is simple, effective, and can be used for the immobilization of other enzymes.