Exploring groundwater hydrochemistry of alluvial aquifers using multi-way modeling

A three-way data set pertaining to hydrochemistry of the groundwater of north Indo-Gangetic alluvial plains was analyzed using three-way component analysis method with the purpose of extracting the information on spatial and temporal variation trends in groundwater composition. Three-way data modeling was performed using PARAFAC and Tucker3 models. The models were tested for their stability and goodness of optimal fit using core consistency diagnostic and split-half analysis. Although, a two-component PARAFAC model, explaining 50.47% of data variance, yielded 100% core consistency, it failed to qualify the validation test. Tucker3 model (3, 3, 1) captured 55.18% of the data variance and yielded simple diagonal core with three significant elements, explaining 100% of the core variability. Interpretation of the information obtained through Tucker3 model revealed that the groundwater quality in Khar watershed is mainly dominated by water hardness and related variables, whereas, water composition of the dug wells is dominated by alkalinity and carbonate/bicarbonates. Moreover, shallow groundwater sources in the region are contaminated with nitrate derived from fertilizers application in the region. The shallow aquifers are relatively more contaminated during the post-monsoon season.     

Multi-way partial least squares modeling of water quality data

A 10 years surface water quality data set pertaining to a polluted river was analyzed using partial least squares (PLS) regression models. Both the unfold-PLS and N-PLS (tri-PLS and quadri-PLS) models were calibrated through leave-one out cross-validation method. These were applied to the multivariate, multi-way data array with a view to assess and compare their predictive capabilities for biochemical oxygen demand (BOD) of river water in terms of their relative mean squares error of cross-validation, prediction and variance captured. The sum of squares of residuals and leverages were computed and analyzed to identify the sites, variables, years and months which may have influence on the constructed model. Both the tri- and quadri-PLS models yielded relatively low validation error as compared to unfold-PLS and captured high variance in model. Moreover, both of these methods produced acceptable model precision and accuracy. In case of tri-PLS the root mean squares errors were 1.65 and 2.17 for calibration and prediction, respectively; whereas these were 2.58 and 1.09 for quadri-PLS. At a preliminary level it seems that BOD can be predicted but a different data arrangement is needed. Moreover, analysis of the scores and loadings plots of the N-PLS models could provide information on time evolution of the river water quality.     

The Phytochemistry and Pharmacology of Tulbaghia,Allium, Crinum and Cyrtanthus: ‘Talented’ Taxa from the Amaryllidaceae

Amaryllidaceae is a significant source of bioactive phytochemicals with a strong propensity to develop new drugs. The genera Allium, Tulbaghia, Cyrtanthus and Crinum biosynthesize novel alkaloids and other phytochemicals with traditional and pharmacological uses. Amaryllidaceae biomolecules exhibit multiple pharmacological activities such as antioxidant, antimicrobial, and immunomodulatory effects. Traditionally, natural products from Amaryllidaceae are utilized to treat non-communicable and infectious human diseases. Galanthamine, a drug from this family, is clinically relevant in treating the neurocognitive disorder, Alzheimer’s disease, which underscores the importance of the Amaryllidaceae alkaloids. Although Amaryllidaceae provide a plethora of biologically active compounds, there is tardiness in their development into clinically pliable medicines. Other genera, including Cyrtanthus and Tulbaghia, have received little attention as potential sources of promising drug candidates. Given the reciprocal relationship of the increasing burden of human diseases and limited availability of medicinal therapies, more rapid drug discovery and development are desirable. To expedite clinically relevant drug development, we present here evidence on bioactive compounds from the genera Allium, Tulgbaghia, Cyrtanthus and Crinum and describe their traditional and pharmacological applications.     

Molineria recurvata Ameliorates Streptozotocin-Induced Diabetic Nephropathy through Antioxidant and Anti-Inflammatory Pathways

Molineria recurvata (MR) has been traditionally used to manage diabetes mellitus in India. However, the molecular mechanism of MR on the diabetic-induced nephropathy has not been clearly investigated. Thus, this study investigates the protective effects of the MR extract on nephropathy in streptozotocin (STZ)-induced diabetic rats. Diabetes was instigated by a single intraperitoneal injection of STZ (45 mg/kg) in male Sprague-Dawley rats. Once the diabetes was successfully induced, the MR extract (200 mg/kg/day) or metformin (200 mg/kg/day) was orally administered for 14 days. Renal function, morphology changes and levels of inflammatory cytokines were measured. Blood glucose concentrations were considerably reduced in STZ-induced diabetic rats following treatment with the MR extract. The administration of the MR extract substantially restored the abnormal quantity of the oxidative DNA damage marker 8-hydroxy-2′-deoxy-guanosine (8-OHdG), malondialdehyde, glutathione, oxidized glutathione, superoxide dismutase, catalase, interleukin (IL)-1β, IL-6, IL-10, and transforming growth factor-β (TGF-β). The urinary excretion of kidney injury molecule-1 (KIM-1), neutrophil gelatinase-associated lipocalin (NGAL), selenium binding protein 1 (SBP1), and pyruvate kinase M2 (PKM2) was significantly reduced in diabetes rats after administration of the MR extracts. In the kidneys of STZ-induced diabetic rats, the MR extracts markedly downregulated the expression of fibronectin, collagen-1, and α-smooth muscle actin (α-SMA). In particular, the MR extracts markedly increased the level of SIRT1 and SIRT3 and reduced claudin-1 in the kidney. These results suggest that the MR extracts exhibits therapeutic activity in contrast to renal injury in STZ-induced diabetic rats through repressing inflammation and oxidative stress.     

Design of β-Amino Acid with Backbone-Side Chain Interactions: Stabilization of 14/15-Helix in α/β-Peptides

A new C-linked carbo-β-amino acid, (R)-β-Caa((r)), having a carbohydrate side chain with d-ribo configuration, was prepared from d-glucose by inverting the C-3 stereocenter to introduce constraints/interactions. From the NMR studies it was inferred that the new monomer may participate in additional electrostatic interactions, facilitating and enhancing novel folds in oligomeric peptides derived from it. The α/β-peptides, synthesized from alternating l-Ala and (R)-β-Caa((r)), have shown the presence of 14/15-helix by NMR (in CDCl(3), methanol-d(3) and CD(3)CN), CD and MD calculations. The hybrid peptides showed the presence of electrostatic interactions involving the intraresidue amide proton and the C3-OMe, which helped in the stabilization of the NH(i)···CO(i-4) H-bonds and adoption of 14/15-helix. The importance of such additional interactions has been well defined in recent times to stabilize the folding in a variety of peptidic foldamers. These observations suggest and emphasize that the side chain-backbone interactions are crucial in the stabilization of the desired folding propensity. The designed monomer thus enlarges the opportunities for the synthesis of peptides with novel conformations and expands the repertoire of the foldamers.     

Labdane-type diterpenoids from the rhizomes of Hedychium coronarium inhibit lipopolysaccharide-stimulated production of pro-inflammatory cytokines in bone marrow-derived dendritic cells

The rhizomes of Hedychium coronarium have been used for the treatment of inflammation, skin diseases, headache, and sharp pain due to rheumatism in traditional medicine. From this plant, two new labdanes, 15-methoxylabda-8(17),11E,13-trien-16,15-olide (1) and 16-methoxylabda-8(17),11E,13-trien-15,16-olide (3), named hedycoronens A and B, as well as four known, labda-8(17),11,13-trien-16,15-olide (2), 16-hydroxylabda-8(17),11,13-trien-15,16-olide (4), coronarin A (5), and corronarin E (6) were isolated. Their chemical structures were elucidated by mass, 1D- and 2D-nuclear magnetic resonance (NMR) spectroscopy. They were evaluated for inhibitory effects on the lipopolysaccharide (LPS)-stimulated production of pro-inflammatory cytokines in bone marrow-derived dendritic cells. Among of them, compounds 1-3 were potent inhibitors of LPS-stimulated interleukin-6 (IL-6) and IL-12 p40, with IC(50) ranging from 4.1±0.2 to 9.1±0.3?μM. Compounds 1 and 3 showed moderate inhibitory activity on the tumor necrosis factor-α (TNF-α) production with IC(50) values of 46.0±1.3 and 12.7±0.3?μM. The remains of compounds showed inactivity. These results warrant further studies concerning the potential anti-inflammatory benefits of labdane-diterpenes from H. coronarium.     

The Properties of Solutions of Isoniazid in Water and Dimethylsulfoxide

The density, viscosity and conductivity of binary mixtures of the front line antitubercular drug isoniazid (INH), in aqueous solution and dimethylsulfoxide (DMSO) solution, were determined at various temperatures (25, 37 and 55?°C) up to 0.3 mol?L^?1 of INH. The apparent molar volumes were calculated from the density data. In the INH + water system the apparent molar volume of INH changed smoothly, whereas in the INH + DMSO system it passes through a maximum. Also, both systems showed pronounced maxima in their viscosity and conductivity isotherms. In addition, UV?CVis, FT-IR and ¹H NMR spectroscopy were performed on the solutions. On the basis of this data, the predominant molecular interactions occurring between INH and water and between INH and DMSO were found to be hydrogen bonds. Furthermore, the susceptibility profile of DMSO, INH and its combination was studied against M. tuberculosis H₃₇Rv and the minimum inhibitory concentration (MIC) determined. The results suggest a synergistic effect of INH at sub-MIC concentrations and DMSO.     

Synthesis and antibacterial evaluation of a new series of N-Alkyl-2-alkynyl/(E)-alkenyl-4-(1H)-quinolones

To gain further insight into the structural requirements of the aliphatic group at position 2 for their antimycobacterial activity, some N-alkyl-4-(1H)-quinolones bearing position 2 alkynyls with various chain length and triple bond positions were prepared and tested for in vitro antibacterial activity against rapidly-growing strains of mycobacteria, the vaccine strain Mycobacterium bovis BCG, and methicillin-resistant Staphylococcus aureus strains, EMRSA-15 and -16. The compounds were also evaluated for inhibition of ATP-dependent MurE ligase of Mycobacterium tuberculosis. The lowest MIC value of 0.5 mg/L (1.2-1.5 μM) was found against M. fortuitum and M. smegmatis. These compounds displayed no or only weak toxicity to the human lung fibroblast cell line MRC-5 at 100 μM concentration. The quinolone derivatives exhibited pronounced activity against the epidemic MRSA strains (EMRSA-15 and -16) with MIC values of 2-128 mg/L (5.3-364.7 μM), and M. bovis BCG with an MIC value of 25 mg/L (66.0-77.4 μM). In addition, the compounds inhibited the MurE ligase of M. tuberculosis with moderate to weak activity showing IC50 values of 200-774 μM. The increased selectivity towards mycobacterial bacilli with reference to MRC-5 cells observed for 2-alkynyl quinolones compared to their corresponding 2-alkenyl analogues serves to highlight the mycobacterial specific effect of the triple bond. Exploration of a terminal bromine atom at the side chain of N-alkyl-2-(E)-alkenyl-4-(1H)-quinolones showed improved antimycobacterial activity whereas a cyclopropyl residue at N-1 was suggested to be detrimental to antibacterial activity.     

Antioxidant, antitubercular and cytotoxic activities of Piper imperiale

Phenolic compounds are widely distributed in Nature and act as pharmacologically active constituents in many herbal medicines. They have multiple biological properties, most notably antioxidant, antibacterial and cytotoxic activities. In the present study an attempt to correlate the phenolic composition of leaf, flower and wood extracts of Piper imperiale, with antioxidant, antitubercular and cytotoxic activities was undertaken. The total phenol content ranged from 1.98 to 6.94 mg GAE/gDW among ethanolic extracts, and gallic acid, catechin, epicatechin, ferulic acid, resveratrol and quercetin were identified and quantified by HPLC. DPPH and ABTS assays showed high antioxidant activity of the leaf extract (EC(50ABTS) = 15.6 μg/mL, EC(50DPPH) = 27.3 μg/mL) with EC?? in the same order of magnitude as the hydroxyquinone (EC(50ABTS) = 10.2 μg/mL, EC(50DPPH) = 15.7 μg/mL). The flower extract showed strong antimicrobial activity against Mycobacterium tuberculosis H??Rv. All the extracts exhibited dose-dependent cytotoxic effects against MCF-7 cancer cells. This is the first time that a Piper extract has been found to be highly active against M. tuberculosis. This study shows the biological potential of Piper imperiale extracts and gives way to bio-guided studies with well-defined biological activities.     

Second-order time discretization for a coupled quasi-Newtonian fluid-poroelastic system

Numerical methods are proposed for the nonlinear Stokes-Biot system modeling interaction of a free fluid with a poroelastic structure. We discuss time discretization and decoupling schemes that allow the fluid and the poroelastic structure computed independently using a common stress force along the interface. The coupled system of nonlinear Stokes and Biot is formulated as a least-squares problem with constraints, where the objective functional measures violation of some interface conditions. The local constraints, the Stokes and Biot models, are discretized in time using second-order schemes. Computational algorithms for the least-squares problems are discussed and numerical results are provided to compare the accuracy and efficiency of the algorithms.