Scaling the characteristic time of the bursting process in the turbulent boundary layer

Characteristic time scales associated with bursting events in the turbulent boundary layer were examined over a very large range of Reynolds numbers based on momentum thickness of 1010, 2870, 4850, and 5×10⁶. Well-resolved hot-wire measurements were obtained at the lowest three Reynolds numbers in a low-speed wind tunnel with a long development length and compared to hot-wire and sonic anemometer measurements in the near-neutral atmospheric surface layer over the salt flats of Utah’s western desert. Bursting events were detected using the modified U-level threshold-crossing algorithm outlined by Luchik and Tiederman (1987) [1]. The same procedure and codes were used to analyze all time series records from both the wind tunnel and field experiments. The time between events, T_e, and the event duration, ΔT, were calculated and normalized using four different types of scalings: inner, outer, mixed, and Taylor microscales. It was found that both Reynolds number and wall-normal trends in the mode of T_e were eliminated when scaled by the Taylor microscale. Furthermore, constant (Reynolds number independent) values of the nondimensional meanT_e and ΔT were found in a narrow wall-normal region near the top of the buffer layer when the data were normalized by the Taylor microscale.     

The Influence of Photosynthetically Active Radiation on the Effects of Ultraviolet-B Radiation on Arabidopsis thaliana

Ultraviolet-B (UVB;280–320 nm) radiation is a small but biologically significant portion of the solar spectrum reaching the earth's surface. Research interests have been fostered because UVB has been increasing in recent years due to depletion of stratospheric ozone. Ultraviolet-B that penetrates into plant tissue may damage important cellular macromolecules. Although there has been considerable research on the effects of UVB on plants, the influence of the level of photosynthetically active radiation (PAR;400–700 nm) on effects of UVB requires further definition as a prelude to studies of UVB sensitivity and defense mechanisms. Arabidopsis thaliana wildtype ecotype Landsberg erecta (LER), which is relatively insensitive to UVB, and the relatively sensitive LER-based mutant transparent testa-5 (tt5), were grown under 100 or 250 μmol m^?2 s^?1 PAR and then exposed to O or 7 kJ m^?2 day ^?1 UVB_BE under these PAR levels. Plants exposed to UVB had reduced dry weight and leaf area and higher levels of UV-absorbing compounds in leaf tissue. The level of PAR did influence the effects of UVB, with the higher level of PAR prior to UVB exposure reducing sensitivity of LER to UVB. In contrast to other studies, higher PAR supplied simultaneously with UVB increased rather than decreased sensitivity of both genotypes to UVB. These results demonstrate the importance of controlling and comparing PAR levels when undertaking studies of UVB sensitivity, as effects of UVB on plants are influenced by the PAR levels plants are growing under prior to and during exposure to UVB.     

A new democratic phase coherent data-scatter technique for calibration, measurement, fingerprinting and rapid archival identification of ultraviolet-visible multi-component food spectra

The new theory of democratic phase coherent data-scatter (DPCD-S) is introduced. Basics of UV-visible spectrometry theory and error propagation have been presented. The qualitative spectral analysis provided is point-by-point over the complete data set and not just limited to Lambda-maxima. Equal weightings of the ‘voting’ data scattering algorithm are employed in the analysis of both the calibration and food colour data and this is consequently the democratic algorithm. The paper shows how the technique can be used with UV-visible standards to analyse the wavelength and photometric calibration of a spectrophotometer. The main results relate to the analysis of a series of spectra taken on complex mixtures of three important food dyes and their quantitative analysis using the phase coherent data-scatter technique. This method is shown to offer new possibilities for identifying and archiving UV-visible spectra from a single point in a transform space. Complex spectra can therefore be represented by a single point in this transform space, which is weighted by the ‘votes’ of all the data points in the complex data set. The software allows the user to interrogate the scatter results and locate the scatter point to the specific spectral positions. A new mathematical operator has been introduced to resolve any possible coincidence of two spectral projection points. Analysis of two close spectra from very-different admixtures of food colours shows powerfully the utility of this operator. Error propagation severely limits the accuracy of the usual UV-method of simultaneous equation secondary mixtures analysis.     

Transform-Limited Pulses Are Not Optimal for Resonant Multiphoton Transitions

Maximizing nonlinear light-matter interactions is a primary motive for compressing laser pulses to achieve ultrashort transform limited pulses. Here we show how, by appropriately shaping the pulses, resonant multiphoton transitions can be enhanced significantly beyond the level achieved by maximizing the pulse's peak intensity. We demonstrate the counterintuitive nature of this effect with an experiment in a resonant two-photon absorption, in which, by selectively removing certain spectral bands, the peak intensity of the pulse is reduced by a factor of 40, yet the absorption rate is doubled. Furthermore, by suitably designing the spectral phase of the pulse, we increase the absorption rate by a factor of 7.     

A piezoelectric goniometer inside a transmission electron microscope goniometer

Piezoelectric nanoactuators, which can provide extremely stable and reproducible positioning, are rapidly becoming the dominant means for position control in transmission electron microscopy. Here we present a second-generation miniature goniometric nanomanipulation system, which is fully piezo-actuated with ultrafine step size for translation and rotation, programmable, and can be fitted inside a hollowed standard specimen holder for a transmission electron microscope (TEM). The movement range of this miniaturized drive is composed of seven degrees of freedom: three fine translational movements (X, Y, and Z axes), three coarse translational movements along all three axes, and one rotational movement around the X-axis with an integrated angular sensor providing absolute rotation feedback. The new piezoelectric system independently operates as a goniometer inside the TEM goniometer. In situ experiments, such as tomographic tilt without missing wedge and differential tilt between two specimens, are demonstrated.     

Multiple‐stage linear ion‐trap with high resolution mass spectrometry towards complete structural characterization of phosphatidylethanolamines containing cyclopropane fatty acyl chain in Leishmania infantum

The structures of phosphatidylethanolamine (PE) in Leishmania infantum are unique in that they consist of a rare cyclopropane fatty acid (CFA) containing PE subfamily, including CFA‐containing plasmalogen PE species. In this contribution, we applied multiple‐stage linear ion‐trap combined with high‐resolution mass spectrometry to define the structures of PEs that were desorbed as [M – H]^? and [M – H + 2Li]⁺ ions by ESI, respectively. The structural information arising from MSⁿ on both the molecular species are complimentary, permitting complete determination of PE structures, including the identities of the fatty acid substituents and their location on the glycerol backbone, more importantly, the positions of the double bond(s) and of the cyclopropane chain of the fatty acid chain, directing to the realization of the CFA biosynthesis pathways that were reported previously. We also uncovered the presence of a minor dimethyl‐PE subclass that has not been previously reported in L. infantum. This LIT MSⁿ mass spectrometric approach led to unambiguous identification of PE molecules including many isomers in complex mixture that would otherwise be very difficult to define using other analytical approaches. Copyright © 2014 John Wiley & Sons, Ltd.     

Azalysine analogues as probes for protein lysine deacetylation and demethylation

Reversible lysine acetylation and methylation regulate the function of a wide variety of proteins, including histones. Here, we have synthesized azalysine-containing peptides in acetylated and unacetylated forms as chemical probes of the histone deacetylases (HDAC8, Sir2Tm, and SIRT1) and the histone demethylase, LSD1. We have shown that the acetyl-azalysine modification is a fairly efficient substrate for the sirtuins, but a weaker substrate for HDAC8, a classical HDAC. In addition to deacetylation by sirtuins, the acetyl-azalysine analogue generates a novel ADP-ribose adduct that was characterized by mass spectrometry, Western blot analysis, and nuclear magnetic resonance spectroscopy. This peptide-ADP-ribose adduct is proposed to correspond to a derailed reaction intermediate, providing unique evidence for the direct 2'-hydroxyl attack on the O-alkylimidate intermediate that is formed in the course of sirtuin catalyzed deacetylation. An unacetylated azalysine-containing H3 peptide proved to be a potent inhibitor of the LSD1 demethylase, forming an FAD adduct characteristic of previously reported related structures, providing a new chemical probe for mechanistic analysis.     

High-performance liquid chromatographic assay of indomethacin in porcine plasma with applicability to human levels

A high-performance liquid chromatography (HPLC) assay is described for the determination of indomethacin in porcine plasma using acetonitrile to precipitate plasma proteins and for the one-step extraction. Calibration curves (using the internal standard method) are linear (r2 > 0.98) over the concentration range of 50.0 to 3000 ng/mL in both mobile phase and plasma. Precision, expressed as the inter- and intraday coefficient of variation (n = 5), is < 7% on the same day and < 5% between days at each plasma control sample of 300, 1000, and 3000 ng/mL, respectively. System precision, calculated as the coefficient of variation (n = 5), is < 7% at 3000 ng/mL of indomethacin, and the limit of quantitation in plasma is 50 ng/mL. The absolute recovery for both indomethacin and the internal standard (mefenamic acid) from plasma is over 97% (n = 3), and the concentrations do not deviate more than -2.9% to 2.4% from their actual values. The specificity of the method is confirmed. This technique is thus reported to be both rapid and specific. The real advantage is the small sample volume required (500 microL), which allows it to be considered for the quantitation of indomethacin in plasma from paediatric patients.