Characterization of the thermally induced topochemical solid-state transformation of NH4[N(CN)2] into NCN[double bond]C(NH2)2 by means of X-ray and neutron diffraction as well as Raman and solid-state NMR spectroscopy

The mechanism of the solid-solid transformation of NH(4)[N(CN)(2)] into NCN[double bond]C(NH(2))(2), which represents the isolobal analogue of W?hler's historic conversion of ammonium cyanate into urea, has been investigated by temperature-dependent single-crystal and powder X-ray diffraction, neutron powder diffraction, and Raman and solid-state NMR spectroscopy as well as thermoanalytical measurements. The transformation of the ionic dicyanamide into its molecular isomer upon controlled thermal treatment was found to proceed topochemically in the solid state with little molecular motion, giving rise to a single-crystal to single-crystal transformation which manifests itself by a defined metric relation between the unit cells of the two isomers. The exothermic phase transition is thermally activated and was observed to commence at temperatures > or =80 degrees C. The pronounced temperature dependence of the onset of the transformation may be assessed as an indication for the metastability of ammonium dicyanamide at elevated temperatures. Thermal analyses reveal a decrease in the reaction enthalpy (56-13 kJ mol(-1)) at higher heating rates and an average mass loss of 10% gaseous ammonia. Evidence was found for crucial mechanistic steps of the transformation, which is likely to proceed via proton transfer from the ammonium ion to one of the terminal nitrogen atoms of the anion. The protonation is followed by nucleophilic attack of the in situ generated ammonia at the electrophilic nitrile carbon. The proposed mechanistic pathway is based on the results of combined Raman and solid-state NMR spectroscopic as well as neutron powder diffraction measurements.     

Applicability of tandem mass spectrometry to the automated comparative sequencing of long-chain oligonucleotides

An algorithm for the comparative sequencing (COMPAS) of oligonucleotides is shown to be suitable for the sequence verification of nucleic acids ranging in length from a few to 80 nucleotides. The algorithm is based on the matching of a fragment ion spectrum generated by collision-induced dissociation to m/z values predicted from a known reference sequence employing established fragmentation pathways. Prior to mass spectrometric investigation, the oligonucleotides were on-line purified by ion-pair reversed-phase high-performance liquid chromatography using monolithic separation columns. This study evaluated the potential and the limits of COMPAS regarding the length and the charge state of oligonucleotides, the selected collision energy, and the analyzed amount of sample using a quadrupole ion trap mass spectrometer. The results revealed that oligonucleotides could be very reliably re-sequenced up to 60-mers, although the algorithm was successfully used to even verify sequences up to 80-mers. The relative collision energy was typically in the range between 13 and 20%, which allowed in most cases a verification of the reference sequence in a window of at least three consecutive collision energies. To select a proper charge state for fragmentation, a compromise had to be found between high signal intensity and low charge state. Furthermore, by reducing the eluent flow rate during elution of the oligonucleotide, the sequence of a 50-mer was successfully verified from the analysis of 295 fmol of the raw product. COMPAS was proven to be reproducible and was applied to the genotyping of the polymorphic, Y-chromosomal locus M9 contained in a 62-base pair polymerase chain reaction product.     

Asymmetric total synthesis of the indole alkaloid cyclopiazonic acid and first structure-activity data

The indole alkaloid α-cyclopiazonic acid (CPA) is one of the few known inhibitors of sarco(endo)plasmic reticulum Ca²⁺-ATPase (SERCA) besides the terpenoids thapsigargin and artemisinin. We report here the first asymmetric total synthesis of cyclopiazonic acid by a modification of the Knight synthesis, currently the most efficient route to CPA. First structure-activity data of CPA derivatives and stereoisomers are presented and will be discussed in connection with the published crystal structures of CPA-SERCA complexes.