Singlet and triplet potential surfaces for the O2+C2H4 reaction

Electronic structure calculations at the CASSCF and UB3LYP levels of theory with the aug-cc-pVDZ basis set were used to characterize structures, vibrational frequencies, and energies for stationary points on the ground state triplet and singlet O(2)+C(2)H(4) potential energy surfaces (PESs). Spin-orbit couplings between the PESs were calculated using state averaged CASSCF wave functions. More accurate energies were obtained for the CASSCF structures with the MRMP2/aug-cc-pVDZ method. An important and necessary aspect of the calculations was the need to use different CASSCF active spaces for the different reaction paths on the investigated PESs. The CASSCF calculations focused on O(2)+C(2)H(4) addition to form the C(2)H(4)O(2) biradical on the triplet and singlet surfaces, and isomerization reaction paths ensuing from this biradical. The triplet and singlet C(2)H(4)O(2) biradicals are very similar in structure, primarily differing in their C-C-O-O dihedral angles. The MRMP2 values for the O(2)+C(2)H(4)→C(2)H(4)O(2) barrier to form the biradical are 33.8 and 6.1 kcal/mol, respectively, for the triplet and singlet surfaces. On the singlet surface, C(2)H(4)O(2) isomerizes to dioxetane and ethane-peroxide with MRMP2 barriers of 7.8 and 21.3 kcal/mol. A more exhaustive search of reaction paths was made for the singlet surface using the UB3LYP/aug-cc-pVDZ theory. The triplet and singlet surfaces cross between the structures for the O(2)+C(2)H(4) addition transition states and the biradical intermediates. Trapping in the triplet biradical intermediate, following (3)O(2)+C(2)H(4) addition, is expected to enhance triplet→singlet intersystem crossing.     

Fragmentation methods on the balance: unambiguous top–down mass spectrometric characterization of oxaliplatin–ubiquitin binding sites

The interaction between oxaliplatin and the model protein ubiquitin (Ub) was investigated in a top–down approach by means of high-resolution electrospray ionization mass spectrometry (ESI-MS) using diverse tandem mass spectrometric (MS/MS) techniques, including collision-induced dissociation (CID), higher-energy C-trap dissociation (HCD), and electron transfer dissociation (ETD). To the best of our knowledge, this is the first time that metallodrug–protein adducts were analyzed for the metal-binding site by ETD-MS/MS, which outperformed both CID and HCD in terms of number of identified metallated peptide fragments in the mass spectra and the localization of the binding sites. Only ETD allowed the simultaneous and exact determination of Met1 and His68 residues as binding partners for oxaliplatin. CID-MS/MS experiments were carried out on orbitrap and ion cyclotron resonance (ICR)-FT mass spectrometers and both instruments yielded similar results with respect to number of metallated fragments and the localization of the binding sites. A comparison of the protein secondary structure with the intensities of peptide fragments generated by collisional activation of the [Ub + Pt-(chxn)] adduct [chxn = (1R,2R)-cyclohexanediamine] revealed a correlation with cleavages in solution phase random coil areas, indicating that the N-terminal β-hairpin and α-helix structures are retained in the gas phase.     

Structural and redox properties of VOx and Pd/VOx thin film model catalysts studied by TEM and SAED

The oxidation of pure V(2)O(3) and Pd/V(2)O(3) films was studied by Transmission Electron Microscopy (TEM) and Selected Area Electron Diffraction (SAED) in the temperature range 673-773 K. Thin films of V(2)O(3) were prepared by reactive deposition of V metal in 10(-2) Pa O(2) on NaCl(001) cleavage faces. Pd particles were epitaxially grown on NaCl(001) and subsequently embedded in V(2)O(3). Oxidation of both pure V(2)O(3) and Pd/V(2)O(3) at 673 K transforms V(2)O(3) into a platelet-like V(2)O(5) structure. At temperatures T>or= 773 K, a reconstruction of the platelet-like V(2)O(5) structure into an array of oblong and needle-type V(2)O(5) nanocrystals of different size occurs. Subsequent reduction of the so-prepared structures in 1 bar H(2) at 573-673 K results in the formation of the cubic VO phase, whereby the external shape of the original crystals is partially maintained. Upon oxidation at 723 K, Pd is transformed into PdO, but its formation is suppressed in comparison with Pd supported on Al(2)O(3) and occurs only at an about 100 K higher temperature than on Pd/Al(2)O(3). The Pd particles are stabilized against oxidation up to 673 K, PdO decomposes upon reduction in hydrogen between 573 and 673 K.     

The DMAP-catalyzed acetylation of alcohols--a mechanistic study (DMAP = 4-(dimethylamino)pyridine)

The acetylation of tert-butanol with acetic anhydride catalyzed by 4-(dimethylamino)pyridine (DMAP) has been studied at the Becke3 LYP/6-311 + G(d,p)//Becke3 LYP/6-31G(d) level of theory. Solvent effects have been estimated through single-point calculations with the PCM/UAHF solvation model. The energetically most favorable pathway proceeds through nucleophilic attack of DMAP at the anhydride carbonyl group and subsequent formation of the corresponding acetylpyridinium/acetate ion pair. Reaction of this ion pair with the alcohol substrate yields the final product, tert-butylacetate. The competing base-catalyzed reaction pathway can either proceed in a concerted or in a stepwise manner. In both cases the reaction barrier far exceeds that of the nucleophilic catalysis mechanism. The reaction mechanism has also been studied experimentally in dichloromethane through analysis of the reaction kinetics for the acetylation of cyclohexanol with acetic anhydride, in the presence of DMAP as catalyst and triethylamine as the auxiliary base. The reaction is found to be first-order with respect to acetic anhydride, cyclohexanol, and DMAP, and zero-order with respect to triethyl amine. Both the theoretical as well as the experimental studies strongly support the nucleophilic catalysis pathway.     

Investigation of gaseous metabolites from moulds by Ion Mobility Spectrometry (IMS) and Gas Chromatography-Mass Spectrometry (GC-MS)

The metabolism of moulds results in the formation of various microbial volatile organic compounds (MVOCs). These substances can be used as an indicator for the presence of moulds in the indoor environment. Three different mould strains were cultivated on culture media and IMS spectra of gaseous mould metabolites were recorded using a portable mini system with a tritium source and a 5 cm drift cell. The headspace spectra are characteristic for mould species and their age. Typical gaseous components of the metabolites were identified and compared with results obtained from gas chromatography using a mass spectrometer detector. It was observed that the MVOCs formation depends on mould species and their growing stage with a maximum of MVOCs emission occurring during the first 10 days. These preliminary results show that IMS can be applied to detect MVOCs in indoor environment and indicate hidden mould growth.     

Diastereoselective hydroformylation of 2,5-cyclohexadienyl-1-carbinols with catalytic amounts of a reversibly bound directing group

A phosphinite plays a role as a reversibly bound directing group for the regio- and diastereoselective hydroformylation of 2,5-cyclohexadienyl-1-carbinols. Of the two alkene functions only one was functionalized through hydroformylation to form a synthetically attractive quaternary carbon center leaving the second alkene function for potential further functionalization.     

Structure and dynamics of the Zr(4+) ion in water

The four-times positively charged zirconium ion in aqueous solution was simulated, using an ab initio quantum mechanical charge field molecular dynamics approach. As no hydrolysis reaction occurred during the simulation time of 10 ps, the target of this study was the evaluation of the structure and dynamics of the monomeric hydrated zirconium(iv) ion. The ion forms three hydration shells. In the first hydration shell the ion is 8-fold coordinated with a maximum probability of the Zr-O distance at 2.25 ?. While no exchanges occurred between the first and second shell, the mean residence time of the water molecules in the second shell is 5.5 ps. A geometry of the first hydration shell in-between a bi-capped trigonal prism and a square antiprism was found and a Zr-O force constant of 188 N m(-1) was evaluated.     

Chemical Applications of Raman Spectroscopy

Raman spectorscopy is—like infrared spectroscopy—a method for the study of vibrations of molecules and crystals. The two methods are complementary: if a vibration results in a change of the polarizability of a molecule, it is Raman active; if a change in the molecular dipole moment results, it is infrared active Vibrations of nonpolar groups and totally symmetrical vibrations of molecules are often only Raman active. IR and Raman spectra together give information about the symmetries and structures of molecules and crystals and about the properties of chemical bonds and intermolecular interactions. Until about 10 years ago Raman spectra could only be recorded on relatively large amounts of essentially colorless substances. After the advent of laser light sources the situation changed completely. The amount of sample substance required is now in the region of milli- and micrograms. Gases, liquids and solid samples, especially air-sensitive and reactive substances, single crystals, crystal needles and filaments as well as aqueous solutions can be readily investigated. The identification of molecules and the elucidation of molecular structures, biochemical analysis, and control of evnivornmental pollution are important aplications of Raman spectroscopy. Raman spectroscopy now constitutes an additional powerful tool in instrumental analysis