Structure and Conformation of Individual Molecules upon Adsorption of a Mixture of Benzoporphyrins on Ag(111), Cu(111), and Cu(110) Surfaces

The front cover artwork is provided by the groups of Prof. Dr. Hans-Peter Steinrück and Prof. Dr. Norbert Jux at the Friedrich-Alexander-Universität (FAU) Erlangen-Nürnberg. The image shows a mixture of six 2H-tetrakis-(3, 5-di-tert-butyl-phenyl)(x)benzoporphyrins (2H-diTTBP(x)BPs, x = 0, 1, 2-cis, 2-trans, 3, or 4) molecules forming a porous square structure on Ag(111) as observed in scanning tunneling microscopy (STM) at room temperature. Read the full text of the Research Article at 10.1002/cphc.202300355 .     

Introduction of Ferrocene as a Facilitator for the Construction of Supramolecular Polymers

Proper monomer design is the key to enhancing the strength of noncovalent interactions between the molecules toward the efficient formation of supramolecular polymers (SPs). We have designed and synthesized 1,n′-disubstituted ferrocene-azobenzene-long alkyl chains, Fc(CONH-Azo-TDP)₂, to afford SPs with a high probability. The design exploits the ‘‘molecular ball-bearing’’ property of the ferrocene core, which allows two azobenzene arms to rotate in the planes of cyclopentadienyl rings, generating the most suitable molecular conformation required for SP formation. This ferrocene monomer formed a supergel consisting of SPs supported by strong intermolecular (H-bonding and π-π stacking) interactions and higher enthalpy gain than the reference molecules, where the central ferrocene core was replaced by flexible aliphatic as well as rigid benzene linkers. The molecular conformation involved in SPs, the strength of noncovalent interactions, and the process of supramolecular polymerization were investigated through NMR, UV-Vis, XRD and TEM studies. The results demonstrate that ferrocene may act as a good modulator for constructing efficient SPs.     

Isolation and characterization of 4-chlorophenol degrading bacterial strain from pharmaceutical xenobiotic compounds contaminated soil using enrichment technique

4- chlorophenol is available as the fundamental basic compound of numerous manufactured organics. It is produced from various sources like herbicides, wood additives, oil industries, pharmaceutical drugs and so on. It can be removed from the effluent by various ways but most effective method is bioremediation. In present study, aerobic bacterial strain was isolated from soil that was contaminated with pharmaceutical xenobiotic compounds using enrichment technique with 500 ppm of 4-chlorophenol as a sole source of carbon and energy. Colonies were isolated after 24 h of incubation on petri plate by media enrichment with 500 ppm of 4- chlorophenol and serial dilution method. 18 colonies were isolated and examined for their ability to degrade 500 ppm of 4-chlorophenol. The most potent strain, C17 was able to remove nearly ～99.93% of 4-chlorophenol in 24 h, 37 °C temperature and 6.8 pH. Based on morphological, biochemical, nucleotide homology and phylogenetic analysis the strain was found to have maximum similarity (98.98%) with Bacillus timonensis strain 10403023.     

Synthesis and characterization of eumelanin‐inspired poly(indoylenearylenevinylene)s and poly(indoylenearyleneethynylene)s

Four novel conjugated polymers containing the eumelanin‐inspired indole core have been successfully synthesized using common cross coupling reactions. These polymers differed by the arylene and the carbon–carbon bond linkage. Optoelectronic experiments of these polymers suggest that the ethynylene linkage contributed to the red‐shifted absorption spectra and blue‐shifted emission spectra when compared to the vinylene linkage polymers. Furthermore, the optical bandgaps of the poly(indoylenearyleneethynylene)s (PIAEs) were smaller compared to the poly(indoylenearylenevinylene)s (PIAVs). Surprisingly, the HOMOs of these polymers were less affected by the nature of the carbon–carbon linkage. However, the LUMOs of the PIAEs were lower in comparison to the PIAVs. These eumelanin‐inspired PIAEs and PIAVs are good fluorophores with fluorescence quantum yields ranging from 0.12 to 0.67 and have good thermal stability for applications such as in organic light‐emitting diodes. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 457–463     

Pyrene-containing peptide-based fluorescent organogels: inclusion of graphene into the organogel

The N-terminally pyrene-conjugated oligopeptide, Py-Phe-Phe-Ala-OMe, (Py=pyrene 1-butyryl acyl) forms transparent, stable, supramolecular fluorescent organogels in various organic solvents. One of these organogels was thoroughly studied using various techniques including transmission electron microscopy (TEM), field-emission scanning electron microscopy (FESEM), atomic force microscopy (AFM), Fourier-transform infrared (FTIR) spectroscopy, photoluminescence (PL) spectroscopy, and rheology. Unfunctionalized and non-oxidized graphene was successfully incorporated into this fluorescent organogel in o-dichlorobenzene (ODCB) to form a stable hybrid organogel. Graphene is well dispersed into the gel medium by using non-covalent π-π stacking interactions with the pyrene-conjugated gelator peptide. In the presence of graphene, the minimum gelation concentration (mgc) of the hybrid organogel was lowered significantly. This suggests that there is a favorable interaction between the graphene and the gelator peptide within the hybrid organogel system. This hybrid organogel was characterized using TEM, AFM, FTIR, PL, and rheological studies. The TEM study of graphene-containing hybrid organogel revealed the presence of both graphene sheets and entangled gel nanofibers. The AFM study indicated the presence of 3 to 4 layers in exfoliated graphene in ODCB and the presence of both graphene nanosheets and the network of gel nanofibers in the hybrid gel system. The rheological investigation suggested that the flow of the hybrid organogel had become more resistant towards the applied angular frequency upon the incorporation of graphene into the organogel. The hybrid gel is about seven times more rigid than that of the native gel.     

Comparison of P···D (D = P,N) with other noncovalent bonds in molecular aggregates

All the minima on the potential energy surfaces of homotrimers and tetramers of PH(3) are identified and analyzed as to the source of their stability. The same is done with mixed trimers in which one PH(3) molecule is replaced by either NH(3) or PFH(2). The primary noncovalent attraction in all global minima is the BP···D (D = N,P) bond which is characterized by the transfer of charge from a lone pair of the donor D to a σ? B-P antibond of the partner molecule which is turned away from D, the same force earlier identified in the pertinent dimers. Examination of secondary minima reveals the presence of other weaker forces, some of which do not occur within the dimers. Examples of the latter include PH···P, NH···P, and PH···F H-bonds, and "reverse" H-bonds in which the source of the electron density is the smaller tail lobe of the donor lone pair. The global minima are cyclic structures in all cases, and exhibit some cooperativity, albeit to a small degree. The energy spacing of the oligomers is much smaller than that in the corresponding strongly H-bonded complexes such as the water trimer.     

Synthesis, structures and membrane properties of siloxane-imide co-polymers produced by aqueous polymerization

We report for the first time, the synthesis of siloxane-imide co-polymers by the reaction of mixtures of 1,4-bis(aminobutyl)tetramethyldisiloxane (ABTMDS) and 1,3-bis(4-aminophenoxy)benzene (TPE-R) with bisphenol A diphthalic anhydride (BPADA) using water as the polymerization solvent. A series of co-polymers were prepared incorporating 10, 20, 40 and 100 mol% of ABTMDS with the aromatic diamine TPE-R as the co-monomer. The synthesized co-polymers showed number average molecular weights in the range of 25,000–60,000. As expected the glass transition temperatures (T_gs) and moduli of the polymers were found to decrease with increasing amounts of the siloxane monomer and the homo-polymer containing only the siloxane diamine showing the lowest T_g (60 °C). The resulting polymers could be solution cast into strong and flexible membranes which showed significant decreases in water absorption and moisture permeability compared to the control polymer without siloxane groups. The polymers were characterized by FTIR, ¹³C and ¹H NMR, GPC, DSC and mechanical properties and structural comparisons were made with similar polymers made by standard solvent synthesis methods. Also cross-linked polymers were prepared by the reaction of ABTMDS with the aromatic homo-polymer control and their membrane properties were compared to those of the water synthesized siloxane co-polymers with a similar siloxane content.     

Effect of surface modes on the six-dimensional molecule-surface scattering dynamics of H2-Cu(100) and D2-Cu(111) systems

We include the phonon modes originating from the three layers of Cu(100)/Cu(111) surface atoms on the dynamics of molecular [H(2)(v,j)/D(2)(v,j)] degrees of freedom (DOFs) through a mean field approach, where the surface temperature is incorporated into the effective Hamiltonian (potential) either by considering Boltzmann probability (BP) or by including the Bose-Einstein probability (BEP) factor for the initial state distribution of the surface modes. The formulation of effective potential has been carried out by invoking the expression of transition probabilities for phonon modes known from the "stochastic" treatment of linearly forced harmonic oscillator (LFHO). We perform four-dimensional (4D?2D) as well as six-dimensional (6D) quantum dynamics on a parametrically time and temperature-dependent effective Hamiltonian to calculate elastic/inelastic scattering cross-section of the scattered molecule for the H(2)(v,j)-Cu(100) system, and dissociative chemisorption-physisorption for both H(2)(v,j)-Cu(100) and D(2)(v,j)-Cu(111) systems. Calculated sticking probabilities by either 4D?2D or 6D quantum dynamics on an effective potential constructed by using BP factor for the initial state distribution of the phonon modes could not show any surface temperature dependence. In the BEP case, (a) both 4D?2D and 6D quantum dynamics demonstrate that the phonon modes of the Cu(100) surface affect the state-to-state transition probabilities of the scattered H(2) molecule substantially, and (b) the sticking probabilities due to the collision of H(2) on Cu(100) and D(2) on Cu(111) surfaces show noticeable and substantial change, respectively, as function of surface temperature only when the quantum dynamics of all six molecular DOFs are treated in a fully correlated manner (6D).