Stationary wavelet transform for under-sampled MRI reconstruction

In addition to coil sensitivity data (parallel imaging), sparsity constraints are often used as an additional l_p-penalty for under-sampled MRI reconstruction (compressed sensing). Penalizing the traditional decimated wavelet transform (DWT) coefficients, however, results in visual pseudo-Gibbs artifacts, some of which are attributed to the lack of translation invariance of the wavelet basis. We show that these artifacts can be greatly reduced by penalizing the translation-invariant stationary wavelet transform (SWT) coefficients. This holds with various additional reconstruction constraints, including coil sensitivity profiles and total variation. Additionally, SWT reconstructions result in lower error values and faster convergence compared to DWT. These concepts are illustrated with extensive experiments on in vivo MRI data with particular emphasis on multiple-channel acquisitions.     

Professional Development Strategically Connecting Mathematics and Science: The Impact on Teachers' Confidence and Practice

The press to integrate mathematics and science comes from researchers, business leaders, and educators, yet research that examines ways to support teachers in relating these disciplines is scant. Using research on science and mathematics professional development, we designed a professional development project to help elementary teachers improve their teaching of mathematics and science by strategically connecting these disciplines. The purposes of this study are: (a) to identify changes in teachers' confidence and practice after participating in the professional development and (b) to identify different ways to connect mathematics and science during the professional development. We use a Likert‐scale survey to assess changes in teachers' confidence related to teaching mathematics and science. In addition, we report on a thematic analysis of teachers' written responses to open‐ended questions that probed teachers' perceived changes in practice. We analyze field notes from observations of project workshops to document different types of opportunities for connecting mathematics and science. We conclude with implications for future professional development that connects mathematics and science in meaningful ways, as well as suggestions for future research.     

Preliminary studies into profiling DNA recovered from a radiation or radioactivity incident

The examination and profiling of human DNA recovered from a scene of crime is an essential aspect of criminal investigations. However, it is currently not known whether DNA recovered from a scene where an ionising radiation source or radioactive contamination is present can be successfully profiled. The direct examination and analysis of radioactively contaminated DNA has not been widely explored using the current procedures employed by forensic service providers. As a result, AWE is putting in place an extensive research and development programme to better understand the effects that radiation has on the ability to profile human DNA, and assess the associated retention of different radioactive contaminants within each step of the profiling procedure. A summary will be provided on the aims of this project and progress that has been made to date; together with a discussion of the lessons that have been learnt during the course of the programme’s development.     

SYNTHESIS OF THE 8-PHOSPHABICYCLO[3.2.1]OCTA-2,6-DIENE RING SYSTEM

Abstract

The 8-phosphabicyclo[3.2.1]octa-2,6-diene ring system is conveniently synthesized by the addition of chloro(diisopropylamino)phosphenium ion ((Cl)(i-Pr₂N)P⁺,1) to cycloheptatriene. Hydrolysis of the primary adduct yields the corresponding phosphinamide (3). The NMR of 3 is discussed in terms of its structure, and the orientation at P is assigned by a combination of 2-D NMR techniques. The structure of 3 is also probed by model calculations at the MNDO level.     

Rapid surface plasmon resonance immunobiosensor assay for microcystin toxins in blue-green algae food supplements

A surface plasmon resonance (SPR) immunobiosensor assay was developed and validated to detect microcystin toxins in Spirulina and Aphanizomenon flos-aquae blue-green algae (BGA) food supplements. A competitive inhibition SPR-biosensor was developed using a monoclonal antibody to detect microcystin (MC) toxins. Powdered BGA samples were extracted with an aqueous methanolic solution, centrifuged and diluted in HBS-EP buffer prior to analysis. The assay was validated in accordance with the performance criteria outlined in EU legislation 2002/657/EC. The limit of detection (LOD) of the assay was calculated from the analysis of 20 known negative BGA samples to be 0.561 mg kg⁻¹. The detection capability (CCβ) of the assay was determined to be ≤0.85 mg kg⁻¹ for MC-LR. The biosensor assay was successfully applied to detect MC-LR toxins in BGA samples purchased on the Irish retail market. MC-LR was detected in samples at levels ranging from <0.5 to 2.21 mg kg⁻¹. The biosensor results were in good agreement with an established LC-MS/MS assay. The assay is advantageous because it employs a simple clean-up procedure compared to chemical assays and allows automated unattended analysis of samples unlike ELISA.     

Internal representation of hierarchical sequences involves the default network

Background  

The default network is a set of brain regions that exhibit a reduction in BOLD response during attention-demanding cognitive tasks, and distinctive patterns of functional connectivity that typically include anti-correlations with a fronto-parietal network involved in attention, working memory, and executive control. The function of the default network regions has been attributed to introspection, self-awareness, and theory of mind judgments, and some of its regions are involved in episodic memory processes.     

Conception and Evaluation of a Library of Cleavable Mass Tags for Digital Polymers Sequencing

A library of phosphoramidite monomers containing a main-chain cleavable alkoxyamine and a side-chain substituent of variable molar mass (i.e. mass tag) was prepared in this work. These monomers can be used in automated solid-phase phosphoramidite chemistry and therefore incorporated periodically as spacers inside digitally-encoded poly(phosphodiester) chains. Consequently, the formed polymers contain tagged cleavable sites that guide their fragmentation in mass spectrometry sequencing and enhance their digital readability. The spacers were all prepared via a seven steps synthetic procedure. They were afterwards tested for the synthesis and sequencing of model digital polymers. Uniform digitally-encoded polymers were obtained as major species in all cases, even though some minor defects were sometimes detected. Furthermore, the polymers were decoded in pseudo-MS³ conditions, thus confirming the reliability and versatility of the spacers library.