Discovery of a two-component monooxygenase SnoaW/SnoaL2 involved in nogalamycin biosynthesis

Nogalamycin is an anthracycline polyketide antibiotic that contains two deoxysugars, at positions C-1 and C-7. Previous biosynthetic studies conducted in vivo affiliated snoaL2 with an unusual C-1 hydroxylation reaction, but in vitro activity was not established. Here, we demonstrate that inactivation of either snoaL2 or snoaW resulted in accumulation of two nonhydroxylated metabolites, nogalamycinone and a novel anthracycline 3',4'-demethoxy-nogalose-nogalamycinone. The C-1 hydroxylation activity was successfully reconstructed in vitro in the presence of the two enzymes, NAD(P)H and the substrates. Based on relative reaction efficiencies, 3',4'-demethoxy-nogalose-nogalamycinone was identified as the likely natural substrate. A biosynthetic model was established where the atypical short-chain alcohol dehydrogenase SnoaW reduces the anthraquinone to a dihydroquinone using NADPH, which enables activation of oxygen and formation of a hydroperoxy intermediate. Finally, protonation of the intermediate by SnoaL2 yields the 1-hydroxylated product.     

hp‐FEM for second moments of elliptic PDEs with stochastic data. I. Analytic regularity

For a linear second order elliptic partial differential operator A : V → V′, we consider the boundary value problems Au = f with stationary Gaussian random data f over the dual V′ of the separable Hilbert space V in which the solution u is sought. The operator A is assumed to be deterministic and bijective. The unique solution u = A^?1f is a Gaussian random field over V. It is characterized by its mean field E_u and its covariance C_u ∈ V ? V. For a class of Gaussian data f with piecewise analytic covariance kernels C_f ∈ V′ ? V′, we characterize analytic regularity of the covariance C_u of the Gaussian solution u in families of countably normed, weighted Sobolev spaces. To this end, we investigate shift theorems for the (nonhypoelliptic) deterministic tensor PDEs (A ? A)C_u = C_f proposed by Schwab and Todor, (Numer Math 95 (2003), 707–734) for the computation of covariance C_u of the random solution u. The nonhypoelliptic nature of A ? A implies that sing supp(C_u) is in general strictly larger than sing supp(C_f). For a model problem, analyticity and singular support of the solution is characterized completely. Based on our regularity results, we outline an hp‐finite element strategy (Pentenrieder, Ph.D thesis, ETHZurich, Dissertation No. 18729, 2009; Pentenrieder and Schwab, Research Report 2010‐08, Seminar for Applied Mathematics, ETH Zürich, Submitted) to approximate C_u stemming from covariances of stationary Gaussian data f. In the second part (Pentenrieder and Schwab, Research Report 2010–08, Seminar for Applied Mathematics, ETH Zürich, Submitted) of this work, we prove that this discretization gives exponential rates of convergence of the FE approximations, in terms of the number of degrees of freedom. © 2011 Wiley Periodicals, Inc. Numer Methods Partial Differential Eq, 2012     

Loss Coefficients in Laminar Flows: Essential for the Design of Micro Flow Systems

The concept of head loss coefficients K for the determination of losses in conduit components is discussed in detail. While so far it has mainly been applied to fully turbulent flows it is extended here to also cover the laminar flow regime which is relevant for micro systems due to the low Reynolds numbers of these flows. Specific numbers of K can be determined by integration of the entropy generation field (second law analysis) obtained from a numerical simulation. It will be shown that a definition of K based on entropy generation is superior to a widely used definition that refers to a pressure drop caused by the conduit component. With the second law analysis details of the physics become available. For example it can be shown that often the main part of the entropy generation occurs downstream of the component. This aspect becomes important when several conduit components are combined in close proximity, like two 90 degree bends that are close to each other. Often in such situations the combination as a whole has to be looked upon as one new complex component. The general approach is discussed and illustrated for various conduit components and combinations of them. (© 2011 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Comprehensive Study of the Enhanced Reactivity of Turbo-Grignard Reagents**

Since its introduction in 2004, Knochel's so called Turbo-Grignard reagents revolutionized the usage of Grignard reagents. Through the simple addition of LiCl to a magnesium alkyl an outstanding increase in reactivity can be achieved. Though the exact composition of the reactive species remained mysterious, the reactive mixture itself is readily used not only in synthesis but also found its way into more distant fields like material science. To unravel this mystery, we combined single-crystal X-ray diffraction with in-solution NMR-spectroscopy and closed our investigations with quantum chemical calculations. Using such a variety of methods, we have gained insight into and an explanation for the extraordinary reactivity of this extremely convenient reagent by determining the structure of the first bimetallic reactive species [t-Bu₂Mg ⋅ LiCl ⋅ 4 thf] with two tert-butyl anions at the magnesium center and incorporated lithium chloride.     

Porous Salts Containing Cationic Al24-Hydroxide-Acetate Clusters from Scalable,Green and Aqueous Synthesis Routes

The solution chemistry of aluminum is highly complex and various polyoxocations are known. Here we report on the facile synthesis of a cationic Al₂₄ cluster that forms porous salts of composition [Al₂₄(OH)₅₆(CH₃COO)₁₂]X₄, denoted CAU-55-X, with X=Cl⁻, Br⁻, I⁻, HSO₄⁻. Three-dimensional electron diffraction was employed to determine the crystal structures. Various robust and mild synthesis routes for the chloride salt [Al₂₄(OH)₅₆(CH₃COO)₁₂]Cl₄ in water were established resulting in high yields (>95 %, 215 g per batch) within minutes. Specific surface areas and H₂O capacities with maximum values of up to 930 m² g⁻¹ and 430 mg g⁻¹ are observed. The particle size of CAU-55-X can be tuned between 140 nm and 1250 nm, permitting its synthesis as stable dispersions or as highly crystalline powders. The positive surface charge of the particles, allow fast and effective adsorption of anionic dye molecules and adsorption of poly- and perfluoroalkyl substances (PFAS).