Long-range electron and hole transport through DNA with tethered cyclometalated iridium(III) complexes

A cyclometalated complex of Ir(III) is covalently tethered to DNA oligonucleotides and serves as both a photooxidant and photoreductant in the study of DNA-mediated hole transport (HT) and electron transport (ET). Spectroscopic and melting temperature studies support intercalation of the tethered complex into the DNA duplex through the functionalized dppz ligand. Using these tethered assemblies, ET and HT is initiated in DNA by the same photoredox probe. Cyclopropylamine substituted bases, N4-cyclopropylcytosine (CPC) and N2-cyclopropylguanine (CPG) are used as kinetically fast electron and hole traps to probe the resulting electron migration processes after direct irradiation of the tethered Ir assembly. Oxidation of CPG and CPC is promoted efficiently by HT from photoexcited Ir(III) when the modified bases are positioned in the purine strands of the A-tract. In contrast, when CPC is embedded in a pyrimidine tract, ET to yield reductive decomposition is observed. Thus, the Ir(III)-tethered DNA assembly containing cyclopropyl-modified bases provides a unique model system to explore the two DNA-mediated electron migration processes using the same photoredox probe and the same DNA bridge.     

A novel and efficient alkyl radical trap in aqueous medium

A simple water soluble diselenide derivative 1 shows radical scavenger properties towards alkyl and hydroxyl radicals (k₃ (0°C)=6.8×10⁸ M⁻¹ s⁻¹) in Fenton-type chemistry. The reaction rate between produceded alkyl radicals 2 and the diselenide overwhelms self-termination and halogen transfer reactions.     

The entrance effect of laminar flow over a backward-facing step geometry

The study investigates the entrance effect for flow over a backward-facing step by comparing predictions that set the inlet boundary at various locations upstream of the sudden expansion. Differences are most significant in the sudden expansion region. If the geometry has an inlet channel, then shorter reattachment and separation lengths are predicted. Comparisons with experimental data indicate that better agreement is found using a long inlet channel, but only for low Reynolds numbers where the experimental error is less significant. For certain cases, predictions with a high expansion number are perturbed by the entrance effect more than low-expansion-number predictions; however, the effect is localized in the sudden expansion region. Channels with low expansion numbers always experience a greater entrance effect after some distance upstream and downstream of the sudden expansion. The boundary layer growth in the inlet channel was examined using a uniform inlet velocity profile. © 1997 John Wiley & Sons, Ltd.     

Recent developments in thio‐, seleno‐, and telluro‐ether ligand chemistry

New routes developed recently to overcome the difficulties usually associated with the sequential introduction of Te centers into polytelluro‐ethers and the introduction of tellurium into macrocyclic compounds are described, including the synthesis of the first facultative telluro‐ethers, RTe(CH₂)₃Te(CH₂)₃TeR, R = Me or Ph, and the first tridentate S₂Te‐donor macrocycles and a tetradentate S₃Te‐donor macrocycle. The first systematic investigations into the preparation and characterization of coordination complexes of MX₃ (M = As, Sb, Bi; X = Cl, Br, I) involving polydentate and macrocyclic thio‐ and seleno‐ether ligands are then discussed. The structures of examples of each class of compound are described, including the first examples of seleno‐ether adducts of the group 15 acceptors. A more limited range of telluro‐ether derivatives has been identified and the structure of the first example of this type is included. These species serve to demonstrate the wide structural diversity exhibited by these systems and the factors directing the assembly of these structures are highlighted. © 2002 Wiley Periodicals, Inc. Heteroatom Chem 13:550–560, 2002; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/hc.10100     

Kinetics of thermally induced phase separation in ternary polymer solutions. I. Modeling of phase separation dynamics

Simulations based on Cahn–Hilliard spinodal decomposition theory for phase separation in thermally quenched polymer/solvent/nonsolvent systems are presented. Two common membrane‐forming systems are studied, cellulose acetate [CA]/acetone/water, and poly(ethersulfone) [PES]/dimethylsulfoxide [DMSO]/water. The effects of initial polymer and nonsolvent composition on the structure‐formation dynamics are elucidated, and growth rates at specific points within the ternary phase diagram are quantified. Predicted pore growth rate curves exhibit a relative maximum with nonsolvent composition. For shallow quenches (lower nonsolvent content) near a phase boundary, the pore growth rate increases with increasing quench depth, whereas for deep quenches, where the composition of the polymer‐rich phase approaches that of a glass, the pore growth rate decreases with increasing quench depth. With increasing initial polymer concentration, the overall rate of structure growth is lowered and the growth rate maximum shifts to higher nonsolvent compositions. This behavior appears to be a universal phenomenon in quenched polymer solutions which can undergo a glass transition, and is a result of an interplay between thermodynamic and kinetic driving forces. These results suggest a mechanism for the locking‐in of the two‐phase structure that occurs during nonsolvent‐induced phase inversion. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 1449–1460, 1999     

Long-range oxidative damage to DNA: effects of distance and sequence

INTRODUCTION: Oxidative damage to DNA in vivo can lead to mutations and cancer. DNA damage and repair studies have not yet revealed whether permanent oxidative lesions are generated by charges migrating over long distances. Both photoexcited *Rh(III) and ground-state Ru(III) intercalators were previously shown to oxidize guanine bases from a remote site in oligonucleotide duplexes by DNA-mediated electron transfer. Here we examine much longer charge-transport distances and explore the sensitivity of the reaction to intervening sequences. RESULTS: Oxidative damage was examined in a series of DNA duplexes containing a pendant intercalating photooxidant. These studies revealed a shallow dependence on distance and no dependence on the phasing orientation of the oxidant relative to the site of damage, 5'-GG-3'. The intervening DNA sequence has a significant effect on the yield of guanine oxidation, however. Oxidation through multiple 5'-TA-3' steps is substantially diminished compared to through other base steps. We observed intraduplex guanine oxidation by tethered *Rh(III) and Ru(III) over a distance of 200 A. The distribution of oxidized guanine varied as a function of temperature between 5 and 35 degrees C, with an increase in the proportion of long-range damage (> 100 A) occurring at higher temperatures. CONCLUSIONS: Guanines are oxidized as a result of DNA-mediated charge transport over significant distances (e.g. 200 A). Although long-range charge transfer is dependent on distance, it appears to be modulated by intervening sequence and sequence-dependent dynamics. These discoveries hold important implications with respect to DNA damage in vivo.